View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21279_high_6 (Length: 532)

Name: NF21279_high_6
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21279_high_6
NF21279_high_6
[»] chr5 (5 HSPs)
chr5 (19-420)||(4175836-4176240)
chr5 (22-275)||(4171822-4172089)
chr5 (417-505)||(14591840-14591928)
chr5 (417-510)||(30917461-30917554)
chr5 (417-505)||(19828629-19828717)
[»] chr3 (2 HSPs)
chr3 (417-505)||(40396829-40396917)
chr3 (433-492)||(50232689-50232747)
[»] chr4 (3 HSPs)
chr4 (432-521)||(25871128-25871217)
chr4 (417-521)||(25506234-25506338)
chr4 (432-521)||(16748843-16748932)
[»] chr6 (1 HSPs)
chr6 (417-521)||(31121161-31121265)
[»] chr1 (1 HSPs)
chr1 (432-505)||(50052797-50052870)
[»] chr2 (1 HSPs)
chr2 (433-522)||(13007955-13008044)


Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 4176240 - 4175836
Alignment:
Q  19 gaacagtcggagtcacttagagctggtggaacttcactcaccctttccaaaaatgggtggagtgctcttgattcaattggagtagcaaattatctcagaa 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4176240 gaacagtcggagtcacttagaactggtggaacttcactcaccctttccaaaaatgggtggagtgctcttgattcaattggagtagcaaattatctcagaa 4176141  T
Q  119 ctcaatatttagaaattcaagggtaatttaattcgttacctttttatttttatcccttgccttgttgcacaattcttatatcagttcataaattcggctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4176140 ctcaatatttagaaattcaagggtaatttaattcgttacctttttatttttatcccttgccttgttgcacaattcttatatcagttcataaattcggctg 4176041  T
Q  219 tacaggatagtgctgaaatctgaggatggaaaagaactacgtgctttaaatttca---aaaaggacgaaaggtatataattatatatggtcaataatata 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||    
T  4176040 tacaggatagtgctgaaatctgaggatggaaaagaactacgtgctttaaatttcaaagaaaaggacggaaggtatataattatatatggtcaataatata 4175941  T
Q  316 tgtggtgtgcattgcataggatggtctcttatcttagatatttatcatttatcattattggtttttgctccggtacaccaaaaaacactacattgcttag 415  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  4175940 tgttgtgtgcattgcataggatggtctcttatcttagatatttatcatttatcattattggtttttgctacggtacaccaaaaaactctacattgcttag 4175841  T
Q  416 gaatt 420  Q
    |||||    
T  4175840 gaatt 4175836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 22 - 275
Target Start/End: Complemental strand, 4172089 - 4171822
Alignment:
Q  22 cagtcggagtcacttagagctggtggaacttcactcaccctttccaaaaatgggtggagtgctcttgattcaattggagtagcaaattatctcagaactc 121  Q
    ||||| ||||||||| || | |||||||||||||||||||||| ||| |||||||||||||  |||||||| ||||||||||||||||| ||||||||||    
T  4172089 cagtcagagtcacttcgaaccggtggaacttcactcacccttttcaagaatgggtggagtgtacttgattccattggagtagcaaattacctcagaactc 4171990  T
Q  122 aatatttagaaattcaagggtaatttaattcgttacctttttatttttatcccttgccttgttgcacaattcttatatca---------------gttca 206  Q
    ||||||||||||||||||||||| |||||| ||||  |||| ||||||||| ||||||| |||||||||| | ||||| |               |||||    
T  4171989 aatatttagaaattcaagggtaacttaatttgtta-gttttaatttttatcacttgcctggttgcacaatgcatatattagctgagcttgagctggttca 4171891  T
Q  207 taaattcggctgtacaggatagtgctgaaatctgaggatggaaaagaactacgtgctttaaatttcaaa 275  Q
    |||  || |||||||||||| ||| |||| ||||||||||||| |||||||||||| || |||||||||    
T  4171890 taatatcagctgtacaggatggtggtgaagtctgaggatggaagagaactacgtgccttcaatttcaaa 4171822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 14591840 - 14591928
Alignment:
Q  417 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcatttt 505  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| || ||| |||||||||| ||||||||||||    
T  14591840 aatttcctcctgttttctcctgtgaaataatcttagccatccattccttttaatgacatctgaataaatcttagcccttcattcatttt 14591928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 510
Target Start/End: Complemental strand, 30917554 - 30917461
Alignment:
Q  417 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgt 510  Q
    ||||| ||||| || |||| |||||||||||| ||||| |||||| |||||||| ||| |||||||||||||| || |||||||||||||||||    
T  30917554 aattttctcctattttctcgagtgaaataatcttagccgtccatttcttttaatgacatcttaattaatcttaacccttcattcattttaatgt 30917461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 19828629 - 19828717
Alignment:
Q  417 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcatttt 505  Q
    ||||||||| |||| ||||| ||||||||||| ||||| ||||| | ||||||||||| ||||| |||| |||||| ||||||||||||    
T  19828629 aatttcctcatgttttctcctgtgaaataatcttagccgtccatccattttaataacatcttaactaattttagcccttcattcatttt 19828717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 505
Target Start/End: Complemental strand, 40396917 - 40396829
Alignment:
Q  417 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcatttt 505  Q
    ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||    
T  40396917 aattttctcctgttttctcctgtgaaataatcttagccatccattccttttaatgacatcttaattaatcttagtccttcattcatttt 40396829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 50232747 - 50232689
Alignment:
Q  433 ctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcc 492  Q
    |||| ||||||||||| || |||||||||| ||||||| ||| |||||||||||||||||    
T  50232747 ctcctgtgaaataatcttaaccatccattc-ttttaatgacatcttaattaatcttagcc 50232689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 432 - 521
Target Start/End: Original strand, 25871128 - 25871217
Alignment:
Q  432 tctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgttttcat 521  Q
    ||||| ||||||||||| || || ||||||||||||||| ||||||||| |||||| |||||||||||||||| |||||||| |||||||    
T  25871128 tctcctgtgaaataatcttaaccgtccattccttttaatgacaccttaactaatctcagcctttcattcatttcaatgtgtcattttcat 25871217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 521
Target Start/End: Original strand, 25506234 - 25506338
Alignment:
Q  417 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgtt 516  Q
    |||||||||| ||| ||||| |||||  |||| ||||| |||||| |||||||| | |||||||||||||| |||| |||||||||||||||||||| ||    
T  25506234 aatttcctccagttttctcctgtgaatcaatcttagccgtccatttcttttaatgaaaccttaattaatctcagcccttcattcattttaatgtgtcatt 25506333  T
Q  517 ttcat 521  Q
    |||||    
T  25506334 ttcat 25506338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 432 - 521
Target Start/End: Original strand, 16748843 - 16748932
Alignment:
Q  432 tctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgttttcat 521  Q
    ||||| ||||||||||| ||| | ||||||| ||||||| ||||||||| |||||| || ||||||||||||| |||||||| |||||||    
T  16748843 tctcctgtgaaataatcttagtcgtccattctttttaatgacaccttaactaatctcagtctttcattcatttcaatgtgtcattttcat 16748932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 521
Target Start/End: Complemental strand, 31121265 - 31121161
Alignment:
Q  417 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgtt 516  Q
    |||||||||| ||| ||||| |||||  |||| ||||| |||||| |||||||| | |||||||||||||| |||| |||||||||||||||||||| ||    
T  31121265 aatttcctccagttttctcctgtgaatcaatcttagccgtccatttcttttaatgaaaccttaattaatctcagcccttcattcattttaatgtgtcatt 31121166  T
Q  517 ttcat 521  Q
    |||||    
T  31121165 ttcat 31121161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 432 - 505
Target Start/End: Original strand, 50052797 - 50052870
Alignment:
Q  432 tctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcatttt 505  Q
    ||||| |||||||||||  |||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||    
T  50052797 tctcctgtgaaataatctcagccatccattccttttaatgacatcttaattaatcttagtccttcattcatttt 50052870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 522
Target Start/End: Complemental strand, 13008044 - 13007955
Alignment:
Q  433 ctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgttttcatc 522  Q
    |||||||||||||||  | ||  ||||||||||||||| ||||||||| | ||||||||| |||||||||||||| ||||| || |||||    
T  13008044 ctccagtgaaataattttggctgtccattccttttaatgacaccttaactgatcttagcccttcattcattttaacgtgtcattgtcatc 13007955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University