View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_16 (Length: 462)
Name: NF21279_low_16
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 9222726 - 9223153
Alignment:
| Q |
18 |
ttttatatcaatttaaagtttaaactcatatgatgagatagataaaaatttagaccatatagaattatgacggtgtctctattattttggatatttgaaa |
117 |
Q |
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| T |
9222726 |
ttttatatcaatttaaagtttaaactcatacgatgagatagataaaaatttagaccatatagaattatgacggtgtct--attattttggatatttgaaa |
9222823 |
T |
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| Q |
118 |
aatttagccaatacacaattactttatgtgctaaaacacaaacttttataggtaaattattgttgccaccgtaatttatgtcactaacgagaatgcaaaa |
217 |
Q |
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| T |
9222824 |
aatttagccaatacaaaattactttatgtgctaaaacacaaacttttataggtaaattattgttgccaccgtaatttatgtcactaaccagaatgcaaaa |
9222923 |
T |
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| Q |
218 |
atattgttgtagaaagctaaaaacaagacaattattgttgttgaatgagctgaaaataggagcagataccgtttttccttggaaagcttggaagaatgag |
317 |
Q |
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| T |
9222924 |
atattgttgtagaaagctaaaaacaagacaattattgt---tgaatgagctgaaaataggagcagataccgtttttccttggaaagcttggaagaatgag |
9223020 |
T |
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| Q |
318 |
aggaaattgcacacacatctacattcatctgcaagtatctcagacaattcttgtatgtttttatttttgaaggcagaataaagtttcataactgcatcta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9223021 |
aggaaattgcacacacatctacattcatctgcaagtatctcagacaattcttgtatgtttttatttttgaaggcagaataaagtttcataactgcatcta |
9223120 |
T |
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| Q |
418 |
gggcttgatcattatcttctcccacaggttctg |
450 |
Q |
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| T |
9223121 |
gggcttgatcattatcttctcccactggttctg |
9223153 |
T |
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