View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_17 (Length: 457)
Name: NF21279_low_17
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 141 - 451
Target Start/End: Original strand, 7043584 - 7043890
Alignment:
| Q |
141 |
tgagaccaaacatcacacaatttaaaaatggatttataccttaaattaatctaatcggtgcttatatcatatcttcccctacaacattaaacaatgccac |
240 |
Q |
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| T |
7043584 |
tgagaccaaacatcacacaatttaaaaatggatttataccttaaattaatctaatcggtgcttatatcatatcttcccctacaacattaaacaatgccac |
7043683 |
T |
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| Q |
241 |
attcttctcaacagctcactannnnnnnaatttaagcttcatattatcactccaacttttcaacaactcactattttttaatttaataaaaattattaaa |
340 |
Q |
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| T |
7043684 |
gttcttctcaacaactcacta-ttttttaatttaagcttgagattatcactccaacttctcaacaactcactattttttaatttaataaaaattattaaa |
7043782 |
T |
|
| Q |
341 |
attcctgaccnnnnnnnnnnnntttattaaaattaaaaggtgctttctccttctcattgtaatattagatcttgcttacgacaacactaagcaactacac |
440 |
Q |
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| T |
7043783 |
attcctgaccaaaaaaaaaa---ttattaaaattaaaaggtgctttctccttctcattgtaatattagatcttgcttactacaacactaagcaactacac |
7043879 |
T |
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| Q |
441 |
attcaaatccc |
451 |
Q |
| |
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||||||||||| |
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| T |
7043880 |
attcaaatccc |
7043890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7043443 - 7043510
Alignment:
| Q |
1 |
ctaacaagtatttgcgagaaactctaaccaacttgtt-ataaggcagttatggattaattcttaacaa |
67 |
Q |
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| T |
7043443 |
ctaacaagtatttgcaagaaactctaaccaacttgttaataaggcagttatggattaattctttacaa |
7043510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 7050954 - 7051034
Alignment:
| Q |
141 |
tgagaccaaacatcacacaatttaaaaatggatttataccttaaattaatctaatcggtgcttatatcatatcttcccctacaac |
225 |
Q |
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| T |
7050954 |
tgagaccagacgtcacacaatctaaaaatggatttataccttaaattaatc----cggtgcttatatcatatcttccactacaac |
7051034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 7017726 - 7017799
Alignment:
| Q |
368 |
taaaattaaaaggtgctttctccttctcattgtaatattagatcttgcttacgacaacactaagcaactacaca |
441 |
Q |
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||||||| |||| | ||||||||||||| || | |||||||||||||||||| |||||||||| |||||||||| |
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| T |
7017726 |
taaaatttaaagatactttctccttctccttatgatattagatcttgcttactacaacactaaacaactacaca |
7017799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 7050794 - 7050840
Alignment:
| Q |
21 |
actctaaccaacttgttataaggcagttatggattaattcttaacaa |
67 |
Q |
| |
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||||| || ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
7050794 |
actctcacaaacttattataaggcagttatggattaattcttaacaa |
7050840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 7024954 - 7024984
Alignment:
| Q |
161 |
tttaaaaatggatttataccttaaattaatc |
191 |
Q |
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|
| T |
7024954 |
tttaaaaatggatttataccttaaattaatc |
7024984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 645854 - 645810
Alignment:
| Q |
22 |
ctctaaccaacttgttataaggcagttatggattaattcttaaca |
66 |
Q |
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||||||| ||||||| ||| ||| ||||||||||||||||||||| |
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| T |
645854 |
ctctaactaacttgtgatatggcggttatggattaattcttaaca |
645810 |
T |
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