View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_18 (Length: 456)
Name: NF21279_low_18
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 24564000 - 24563559
Alignment:
| Q |
1 |
tttcttcgtagttcagtgagtaaaggggaaaactaatagagatggaaaaatcactttattttggggtgagcaagtaacctttttcactaaatcttattat |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564000 |
tttcttcgtatttcagtgagtaaaggggaaaactaatagagatggaaaaatcactttattttggggtgagcaagtaacctttttcactaaatcttattat |
24563901 |
T |
|
| Q |
101 |
aagtgaagtgaaatgagagaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563900 |
aagtgaagtgaaatgagagaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaaagcagttgcgaacttatctaa |
24563801 |
T |
|
| Q |
201 |
accattgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563800 |
accattgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatg |
24563701 |
T |
|
| Q |
301 |
ctcaactaaagataatgagttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24563700 |
ctcaactaaagataatgagttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttatgaaccttcttggaattggttcgg |
24563601 |
T |
|
| Q |
401 |
atcacactgttatctcaaaagctttggaagatatctcctatg |
442 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563600 |
atcacactgttatctcaaaagctttggaagatatctcctatg |
24563559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 7e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 45535758 - 45536060
Alignment:
| Q |
18 |
gagtaaaggggaaaactaatagaga--tggaaaaatcactttattttggggtgagcaagtaaccttt-----ttcactaaatcttattataagtg--aag |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| || |
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| T |
45535758 |
gagtaaaggggaaaactaatagagagatggaaaaatcactttattttgaggtgagcaagtaacctttcctttttcactaaatcgtattataagtgtgaat |
45535857 |
T |
|
| Q |
109 |
tgaaatgagagaatgattggaattaatgatttcaacgggcatacagggatttacgtgagtctagaaattaa----agcagttgcgaacttatctaaacca |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| | || ||| |||||||||||||||| |
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| T |
45535858 |
tgaaatgagagaatgattggaattaatgatttcaacgggtatacaaggatttacatgagtctagaaattaattaaaacacttgggaacttatctaaacca |
45535957 |
T |
|
| Q |
205 |
tt-gttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctc |
303 |
Q |
| |
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|| ||||||||||||||| |||||||||||||| | || ||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||| |
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| T |
45535958 |
tttgttggtttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatagaaaaagggaggaaatccaagaagatatgctc |
45536057 |
T |
|
| Q |
304 |
aac |
306 |
Q |
| |
|
||| |
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|
| T |
45536058 |
aac |
45536060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 320 - 417
Target Start/End: Complemental strand, 44337525 - 44337428
Alignment:
| Q |
320 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatgaaccttcttggaattggttcggatcacactgttatctca |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||| | |||||||||||||||||| ||||||| |
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| T |
44337525 |
ttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttacgcaccttcttgaatttggttcggatcacactgctatctca |
44337428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 314
Target Start/End: Complemental strand, 44337779 - 44337629
Alignment:
| Q |
164 |
tgagtctagaaattaaagcagttgcgaacttatctaaaccattgttggtttgg-tttcttaattacggatgtagtttgagatttttaatgatacactatt |
262 |
Q |
| |
|
||||||||||| ||||| || ||| ||||||||||||||||||||| |||||| ||||| |||||| || || || | | ||||||||||||||||| |
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| T |
44337779 |
tgagtctagaagttaaaacacttgggaacttatctaaaccattgttagtttggttttctgaattacaaatatatttcaaaaaatttaatgatacactatt |
44337680 |
T |
|
| Q |
263 |
aatagaacataaaaagggagggaatccaagaagatatgctcaactaaagata |
314 |
Q |
| |
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| ||||||| ||||| ||||||||||||||| |||| |||||| |||||| |
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| T |
44337679 |
attagaaca-gaaaagtgagggaatccaagaaactatgttcaactgaagata |
44337629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 45536177 - 45536235
Alignment:
| Q |
320 |
ttgatcgtggtatggctgctaagggcttttccaatacatttgctctgattcaagctatg |
378 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
45536177 |
ttgatcgtggtatagctaccaagggcttttccaatacatttgctctgattcaagttatg |
45536235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 26 - 323
Target Start/End: Complemental strand, 9798893 - 9798586
Alignment:
| Q |
26 |
gggaaaactaatag--agatggaaaaatcactttattttggggtgagcaagtaacct--------------ttttcactaaatcttattataagtgaagt |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||| || ||||||||||||| ||||||||||||||| |
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| T |
9798893 |
gggaaaactaatagtgagatggaaaaatcactttattatggggcgagcaagtaaactcttctattatttccttttcactaaatcgtattataagtgaagt |
9798794 |
T |
|
| Q |
110 |
gaaatgagagaatgattggaattaatgatttcaacgggcatacagggatttacg--tgagtctagaaattaaagcagttgcgaacttatctaaaccattg |
207 |
Q |
| |
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|||||||||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| |||| || ||| ||||||||||||||||||| |
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| T |
9798793 |
gaaatgagagaatgatagaaattaatgatttcaaa--------agggatttacgaatgaatctagaaactaaaacacttgggaacttatctaaaccattg |
9798702 |
T |
|
| Q |
208 |
ttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctcaact |
307 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || | ||| ||||||||||||||||||||||||||||| |
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|
| T |
9798701 |
ttgatttggtttcttaattacggatgtagttcgagatttttaatgatacactattattagagcagacaaatggagggaatccaagaagatatgctcaact |
9798602 |
T |
|
| Q |
308 |
aaagataatgagttga |
323 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
9798601 |
aaagataaggagttga |
9798586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 19190201 - 19190303
Alignment:
| Q |
204 |
attgttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacataaaaagggagggaatccaagaagatatgctc |
303 |
Q |
| |
|
||||||||||| |||||| ||||| | ||||| || || | |||||||||| ||||||| ||||||| |||||| |||||||||||||||| ||||||| |
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|
| T |
19190201 |
attgttggtttagtttctgaattatgaatgtatttcgaaaattttaatgatgtactattattagaacagaaaaagtgagggaatccaagaagctatgctc |
19190300 |
T |
|
| Q |
304 |
aac |
306 |
Q |
| |
|
||| |
|
|
| T |
19190301 |
aac |
19190303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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