View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_19 (Length: 456)
Name: NF21279_low_19
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 15203708 - 15203280
Alignment:
| Q |
18 |
ctattatggttgtgatgtcgttgcagagacatctaaaacctttatattagactacgaaatcaatattttttatttgtttacaaccataattaaatctgca |
117 |
Q |
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| T |
15203708 |
ctattatggttgtgatgtccttgcagagacatctaaaacctttatattagactacgaaatcaatattttttatgtgtttacaaccataattaaatctgca |
15203609 |
T |
|
| Q |
118 |
tcggccacattttcttatggttctcttcacatgacaatcacaaatattaatagtttgtttacctggacaataaacaaaagagagagacaaaaacatgcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15203608 |
tcggccacattttcttatggttctcttcacatgacaatcacaaatattaatagtttgtttacctggacaataaacaaaagagagagacaaaaacatgcaa |
15203509 |
T |
|
| Q |
218 |
ctgcaagaagaaaagcaccaagtatccaatctgatttccctaataggtaaattccacttgctccaatttctatatgttgaattgcatcatttatcaatgg |
317 |
Q |
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| T |
15203508 |
ctgcaagaagaaaagcaccaagtatccaatctgatttccctaataggtaaattccacttgctccaatttctatatgttgaattgcatcatttatcaatgg |
15203409 |
T |
|
| Q |
318 |
catccctttataaaatgtcacaactaatgcccctgcaatagagaccactgtgccaataacttttgcctggctgctatgctttttcatatttagaacttcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15203408 |
catccctttataaaatgtcacaactaatgcccctgcaatagagaccactgtgccaataacttttgcctggctgctatgctttttcatatttagaacttcc |
15203309 |
T |
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| Q |
418 |
atcctgaaaatgcacatcacagtattcat |
446 |
Q |
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| T |
15203308 |
atcctgaaaatgcacatcacagtattcat |
15203280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 167 - 446
Target Start/End: Complemental strand, 15210515 - 15210236
Alignment:
| Q |
167 |
atagtttgtttacctggacaataaacaaaagagagagacaaaaacatgcaactgcaagaagaaaagcaccaagtatccaatctgatttccctaataggta |
266 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||| | |
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| T |
15210515 |
atagtttgtttacctggacaataaacaaaagagaaagacaaaaactaccaactgcaacaagaaaagcaccaattatccaatctgatttccctaaaaggaa |
15210416 |
T |
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| Q |
267 |
aattccacttgctccaatttctatatgttgaattgcatcatttatcaatggcatccctttataaaatgtcacaactaatgcccctgcaatagagaccact |
366 |
Q |
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||||||||||||||| |||||||||| || ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15210415 |
aattccacttgctcccatttctatatttttaatggcatcattaatcaatggtatccctttataaaatgtcacaactaatgcccctgcaatagagaccact |
15210316 |
T |
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| Q |
367 |
gtgccaataacttttgcctggctgctatgctttttcatatttagaacttccatcctgaaaatgcacatcacagtattcat |
446 |
Q |
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| T |
15210315 |
gtgccaataacttttgcctggctgctatgctttttcatatttagaacttccatcctgaaaatgcacatcacagtattcat |
15210236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 219 - 433
Target Start/End: Complemental strand, 15191537 - 15191323
Alignment:
| Q |
219 |
tgcaagaagaaaagcaccaagtatccaatctgatttccctaataggtaaattccacttgctccaatttctatatgttgaattgcatcatttatcaatggc |
318 |
Q |
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|
|||||||||||||||||||| |||||| |||||||||||||||||||||||| || ||||||| |||||||||| ||||| ||| |||| ||||||||| |
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| T |
15191537 |
tgcaagaagaaaagcaccaattatccagtctgatttccctaataggtaaatttcagttgctcccatttctatattttgaaaggcaccattaatcaatggc |
15191438 |
T |
|
| Q |
319 |
atccctttataaaatgtcacaactaatgcccctgcaatagagaccactgtgccaataacttttgcctggctgctatgctttttcatatttagaacttcca |
418 |
Q |
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||||||||||| |||||||| ||||||||| |||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15191437 |
atccctttatataatgtcacggttaatgcccccacaatggagaccaatgtaccaataatctttgcctggctgctatgctttttcatatttagaacttcca |
15191338 |
T |
|
| Q |
419 |
tcctgaaaatgcaca |
433 |
Q |
| |
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||||||||||||||| |
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| T |
15191337 |
tcctgaaaatgcaca |
15191323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 175 - 426
Target Start/End: Complemental strand, 15181704 - 15181453
Alignment:
| Q |
175 |
tttacctggacaataaacaaaagagagagacaaaaacatgcaactgcaagaagaaaagcaccaagtatccaatctgatttccctaataggtaaattccac |
274 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||| | ||| ||||||||||||||||||||||||||| |||||||| || | || | |||||||| |
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| T |
15181704 |
tttacctggacaatatacaaaacagaaagacaaaagctagcagttgcaagaagaaaagcaccaagtatccagtctgatttaactgaaagatgaattccac |
15181605 |
T |
|
| Q |
275 |
ttgctccaatttctatatgttgaattgcatcatttatcaatggcatccctttataaaatgtcacaactaatgcccctgcaatagagaccactgtgccaat |
374 |
Q |
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|||||||||||||||||| ||||| |||||| | |||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
15181604 |
ttgctccaatttctatattttgaaaggcatcactaatcaatggtatccctttatataatgtcacagttaatgcccctgcaatagagactactgtgccaat |
15181505 |
T |
|
| Q |
375 |
aacttttgcctggctgctatgctttttcatatttagaacttccatcctgaaa |
426 |
Q |
| |
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|| ||| || ||||||||||| | ||||| ||||||| ||||||||||||| |
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| T |
15181504 |
aattttagcttggctgctatggtgtttcagatttagattttccatcctgaaa |
15181453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 5998416 - 5998376
Alignment:
| Q |
26 |
gttgtgatgtcgttgcagagacatctaaaacctttatatta |
66 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||| |
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| T |
5998416 |
gttgcgatgtcgttgcagagacctctaaaacctttatatta |
5998376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 5630926 - 5630963
Alignment:
| Q |
28 |
tgtgatgtcgttgcagagacatctaaaacctttatatt |
65 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||| |
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| T |
5630926 |
tgtgctgttgttgcagagacatctaaaacctttatatt |
5630963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 53806360 - 53806405
Alignment:
| Q |
20 |
attatggttgtgatgtcgttgcagagacatctaaaacctttatatt |
65 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||||||| |
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|
| T |
53806360 |
attatggttgtgatgtcgttgtggatacatctaaaacttttatatt |
53806405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 19239570 - 19239615
Alignment:
| Q |
20 |
attatggttgtgatgtcgttgcagagacatctaaaacctttatatt |
65 |
Q |
| |
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||||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
19239570 |
attatggttgtgatgtcgttgtggatacatctaaaacttttatatt |
19239615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 55116839 - 55116884
Alignment:
| Q |
20 |
attatggttgtgatgtcgttgcagagacatctaaaacctttatatt |
65 |
Q |
| |
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||||||||||||||||||||| || ||||||||||| |||||||| |
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|
| T |
55116839 |
attatggttgtgatgtcgttgtggatacatctaaaacttttatatt |
55116884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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