View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_2 (Length: 843)
Name: NF21279_low_2
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 777; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 41 - 833
Target Start/End: Complemental strand, 37834481 - 37833689
Alignment:
| Q |
41 |
acatatcttggacaatactgctgcaagttatgacgagctttttcagccttcttttcctgagatacaatccaataacatggaaataaatagtacttctcaa |
140 |
Q |
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| T |
37834481 |
acatatcttggacaatactgctgcaagttatgacgagctttttcagccttcttttcctgagatacaatccaataacatggaaataaatagtacttctcaa |
37834382 |
T |
|
| Q |
141 |
caatatgaggtaatggggcaaccttttagcagcaccattactaaacggcatcagaatggaagtcttatgcaaagtgtaggaaattggctggtattggatt |
240 |
Q |
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| T |
37834381 |
caatatgaggtaatggggcaaccttttagcagcaccattactaaacagcatcagaatggaagtcttatacaaagtgtaggaaattggcaggtattggatt |
37834282 |
T |
|
| Q |
241 |
agttatacggcaaagaaatatgtgtcattctgatactggtctgtataagtactttaggcaacgactatttctgcaagtaaaattgatacttcatctgcaa |
340 |
Q |
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| T |
37834281 |
agttatacggcaaagaaatatgtgtcattctgatactggtctgtataagtactttaggcaacgactatttctgcaagtaaaattgatacttcatctgcaa |
37834182 |
T |
|
| Q |
341 |
ttaatactcatttgtttgcattatttcatgtttatatagtatattgtttagttctaaatcaggatctattgtctgtttcatataagcttttgctttatgt |
440 |
Q |
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| T |
37834181 |
ttaatactcatttgtttgcattatttcatgtttatatagtatattgtttagttctaaatcaggatctattgtctgtttcatataagcttttgctttatgt |
37834082 |
T |
|
| Q |
441 |
atgagtaactctttaacatttatctttttaattctctccatcaaactcatttaattgctaaaagctcaactttccatatgaacaggcaactggttttaat |
540 |
Q |
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| T |
37834081 |
atgagtaactctttaacatttatctttttaattctctccatcaaactcatttaattgctaaaagctcaactttccatatgaacaggcaactggttttaat |
37833982 |
T |
|
| Q |
541 |
tccttaaccagttggctcctagatggtgatcattcagtctcaacatgtgagattagttataataacaacgaacaggaagaactgagaaagccatctactt |
640 |
Q |
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| T |
37833981 |
tccttaaccagttggctcctagatggtgatcattcagtctcaacatgtgagattagttataataacaacgaacaggaagaactgagcaagccatctactt |
37833882 |
T |
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| Q |
641 |
ctaatgcttattgggatacaattgaaagcgaaaatggattcgacagtacaattattccctcccaagatcactttgacgactgtgtactgtgcccatctat |
740 |
Q |
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| T |
37833881 |
ctaatgcttattgggatacaattgaaagcgaaaatggattcgacagtacaattattccctcccaagatcactttgacgactgtgtactgtgcccatctat |
37833782 |
T |
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| Q |
741 |
tttctgtgatcatcttttcagcatcattaatatttctcctagctggacatttgaagactcagaaattaaggtattctattttgatattcttcg |
833 |
Q |
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| T |
37833781 |
tttctgtgatcatcttttcagcatcattaatatttctcctagctggacatttgaagactcagaaattaaggtattctattttgatattcttcg |
37833689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 645 - 830
Target Start/End: Complemental strand, 37842306 - 37842121
Alignment:
| Q |
645 |
tgcttattgggatacaattgaaagcgaaaatggattcgacagtacaattattccctcccaagatcactttgacgactgtgtactgtgcccatctattttc |
744 |
Q |
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| T |
37842306 |
tgcttattgggatacagttgaaagcgaaaatggtgttgacagtacaactattccttcccaggtgcacctggagaactatgtactggatccatctatttgc |
37842207 |
T |
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| Q |
745 |
tgtgatcatcttttcagcatcattaatatttctcctagctggacatttgaagactcagaaattaaggtattctattttgatattct |
830 |
Q |
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| T |
37842206 |
tatgatcagcttttcagcatcattgattattccccaagttggacatttgaagactcggaaattgaggtattctattttgatattct |
37842121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 90 - 331
Target Start/End: Complemental strand, 37843298 - 37843046
Alignment:
| Q |
90 |
tcttttcctgagatacaatccaataacatggaaataaatagtacttctcaacaatatgaggtaatggggcaaccttttagcagcaccattactaaacggc |
189 |
Q |
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| T |
37843298 |
tcttttcctgaaaaagaacccaataacatggaaatcaatagtacttctcaaggatatgagacaatggggcaacatttaaccatcagcattactaaacagc |
37843199 |
T |
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| Q |
190 |
atcagaatggaagtcttatgcaa-----ag-tgtaggaaattggctggtattggattagttatac------ggcaaagaaatatgtgtcattctgatact |
277 |
Q |
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| T |
37843198 |
atgagaatagaagttttatacaagctgaagctgaaggaaattggcaggtatgtgactagttatacttttatggtaaagaaatttgtgtcattctgatatt |
37843099 |
T |
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| Q |
278 |
ggtctgtataagtactttaggcaacgactatttctgcaagtaaaattgatactt |
331 |
Q |
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| T |
37843098 |
ggtctgtttaagtac-ttaggaaacaactatgtctgcaagtaaaattgatactt |
37843046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 37843039 - 37842978
Alignment:
| Q |
356 |
ttgcattatttcatgtttatatagta-tattgtttagttctaaatcaggatctattgtctgtt |
417 |
Q |
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| T |
37843039 |
ttgcattatttcatgtt-acatagtaatattatttagttttaaatcaggatctatagtctgtt |
37842978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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