View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_28 (Length: 399)
Name: NF21279_low_28
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 5449945 - 5449573
Alignment:
| Q |
16 |
tcaacaactgaagactcttgattttctccacatactaagaaagtaataagcaaaacaaaaaacattgccttcttcaacccccc-aacaaatgaaaactta |
114 |
Q |
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| T |
5449945 |
tcaacaactgaagactcttgattttctccacatactaagaaagtaataagcaaaacaaaaaacattgccttcttcaacccccccaacaaatgaaaactta |
5449846 |
T |
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| Q |
115 |
tgaaagtgcatgttttttgatgccgtgatgaagtggtaacaccaatgcaatgcatacatatataaagttggatgaattaaagacaaagaagcacttgatg |
214 |
Q |
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| T |
5449845 |
tgaaagtgcatgttttttgatgccgtgatgaagtggtaacaccaatgcaatgcatacatatataaagttggatgaattaaagacaaagaagcacttgatg |
5449746 |
T |
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| Q |
215 |
atgtatatgaaagcagatgaaaaagctaataggcnnnnnnnnnnnnnnnnnnnnnggcagtgtagaaggaaaaaggtgatgcagtgtttttcattatgca |
314 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5449745 |
atgtatatgaaagcagatgaaaaagctaataggctttgtttgtttgttttgtttgggcagtgtagaaggaaaaaggtgatgcagtgtttttcattatgca |
5449646 |
T |
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| Q |
315 |
catcactgcaaacaagggacacatctcacgagagggcnnnnnnnncttacttacttttgctttaatttattct |
387 |
Q |
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| T |
5449645 |
catcactgcaaacaagggacacatctcacgagagggcttttttttcttacttacttttgctttaatttattct |
5449573 |
T |
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