View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21279_low_3 (Length: 800)
Name: NF21279_low_3
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 48816596 - 48816320
Alignment:
| Q |
19 |
atcaagacccaactgaagaattttactttaagactttctttgattctggagagtttggatttggtctgtcaacggtgtctttgatacctaatcgtgattg |
118 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48816596 |
atcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttggatttggtctgtcaacggtgtctttgatacctaatcgtgattg |
48816497 |
T |
|
| Q |
119 |
tccaccacatgctcagttcattgatacatacattcactcggctgatggtacaccaagcctattgaagaatgcaatttgtgtgtttgaacaatatggtaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48816496 |
tccaccacatgctcagttcattgatacatacattcactcggctgatggtacaccaagcctattgaagaatgcaatttgtgtgtttgaacaatatggtaat |
48816397 |
T |
|
| Q |
219 |
atcatgtggcgtcacactgaaactggcattcctaatgagttcgtaagagtttttcctgcaaccaactaatttaacta |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
48816396 |
atcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatttaacta |
48816320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 48808037 - 48807763
Alignment:
| Q |
19 |
atcaagacccaactgaagaattttactttaagactttctttgattctggagagtttggatttggtctgtcaacggtgtctttgatacctaatcgtgattg |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
48808037 |
atcaagacccaaccgaagaattttactttaagactttctttgattctggagagtttggatttgccctgtcaacggtgtctttgatacctaatcgtgattg |
48807938 |
T |
|
| Q |
119 |
tccaccacatgctcagttcattgatacatacat----tcactcggctgatggtacaccaagcctattgaagaatgcaatttgtgtgtttgaacaatatgg |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48807937 |
tccaccacatgctcagttcattcatacatacatacattcactcggctgatggtacaccaagcctattgaagaatgcaatttgtctgtttgaacaatatgg |
48807838 |
T |
|
| Q |
215 |
taatatcatgtggcgtcacactgaaactggcattcctaatgagttcgtaagagtttttcctgcaaccaactaatt |
289 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
48807837 |
taatatcatgtggcgtcacactgaaactgacattcctaatgaattcgtaagagtttttactgcaaccaactaatt |
48807763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 333 - 553
Target Start/End: Complemental strand, 48816282 - 48816062
Alignment:
| Q |
333 |
gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48816282 |
gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag |
48816183 |
T |
|
| Q |
433 |
ttcaaagcaagtggttctatcaagcctgctgtaagtatttagttttgtttatttgttactccatgtttactaaatgttttatatagataattatatgtaa |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
48816182 |
ttcaaagcaagtggttctatcaagcctgctgtaagtatttagttttgtttatttgttactccatgtttactaaatgttttatatagataattatacgtaa |
48816083 |
T |
|
| Q |
533 |
gtgtaagtgatctcataatta |
553 |
Q |
| |
|
||||||||||||||| ||||| |
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|
| T |
48816082 |
gtgtaagtgatctcacaatta |
48816062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 48790293 - 48790048
Alignment:
| Q |
21 |
caagacccaactgaagaattttactttaagactttctttgattctggagagtttggatttggtctgtcaacggtgtctttgatacctaatcgtgattgtc |
120 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| || || |||||||| ||||||||||||||||| || || |||||||||||||| || |||||||||| |
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|
| T |
48790293 |
caagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgatacccaaccgtgattgtc |
48790194 |
T |
|
| Q |
121 |
caccacatgctcagttcattgatacatacattcactcggctgatggtacaccaagcctattgaagaatgcaatttgtgtgtttgaacaatatggtaatat |
220 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| | ||||||||| |||||| | |||||||||||||||||||| || |||||||||| || ||| |
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|
| T |
48790193 |
caccacatgcccaattcattgatacatacattcactctgatgatggtaccccaagcatcttgaagaatgcaatttgtgttttcgaacaatatgatagtat |
48790094 |
T |
|
| Q |
221 |
catgtggcgtcacactgaaactggcattcctaatgagttcgtaaga |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
48790093 |
tatgtggcgtcacactgaaactggcattcctgatgaatttgtaaga |
48790048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 547 - 790
Target Start/End: Complemental strand, 48816029 - 48815793
Alignment:
| Q |
547 |
ataattacaaaacagattttgtaataaaataatacatataaaaaa-ttcgtagtgtgttactggaagataagattttannnnnnngaaaagattggaaga |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| || |
|
|
| T |
48816029 |
ataattacaaaacagattttgtaataaaataatacatataaaaaaattcgtagagtgttactggaagataagattttctttttttgaaaaga------ga |
48815936 |
T |
|
| Q |
646 |
taagatatggttcttcataaacacgttcatttcattcccaatcttcgagggagtttaccaagcgggtcactaaagtaccgtgtgtaattatgtatcctgt |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || |||| |||||| |||| ||| |
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|
| T |
48815935 |
taagatatggttcttcataaacacgttcatttcatttccaatcttcgagggaatttaccaagcgggtcactaaa--acactgtgcaattatatatcttgt |
48815838 |
T |
|
| Q |
746 |
ctcttggtatttctggattttcttaaggcaaggatctagatattt |
790 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48815837 |
ctcttggtatttttggattttcttaaggcaaggatctagatattt |
48815793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 15825824 - 15825579
Alignment:
| Q |
21 |
caagacccaactgaagaattttactttaagactttctttgattctggagagtttggatttggtctgtcaacggtgtctttgatacctaatcgtgattgtc |
120 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| || || ||| ||||||||| ||||||||||| || || || |||||||||||||||||||| |||| |
|
|
| T |
15825824 |
caagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatttggtcgatctactgtttctttgatacctaatcgtgactgtc |
15825725 |
T |
|
| Q |
121 |
caccacatgctcagttcattgatacatacattcactcggctgatggtacaccaagcctattgaagaatgcaatttgtgtgtttgaacaatatggtaatat |
220 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| |
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|
| T |
15825724 |
caccacactctcatttcattgatacatacattcactctgtagatggtacaccaagcctcttgaagaatgcaatttgtgtttttgaacaatatggtagtat |
15825625 |
T |
|
| Q |
221 |
catgtggcgtcacactgaaactggcattcctaatgagttcgtaaga |
266 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
15825624 |
tatgtggcgtcacactgaaactagcattcctaatgaatttgtaaga |
15825579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 48833904 - 48834149
Alignment:
| Q |
21 |
caagacccaactgaagaattttactttaagactttctttgattctggagagtttggatttggtctgtcaacggtgtctttgatacctaatcgtgattgtc |
120 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |
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|
| T |
48833904 |
caagatccatctgatgaattttactttaagactttctttgatgctggagagtttgaatttggtttgtcaacggtgtctttgatacctaatcctgattgtc |
48834003 |
T |
|
| Q |
121 |
caccacatgctcagttcattgatacatacattcactcggctgatggtacaccaagcctattgaagaatgcaatttgtgtgtttgaacaatatggtaatat |
220 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||||| || || ||| |||||| || |||||||||||| ||||| | |||||||||||| | ||| |
|
|
| T |
48834004 |
caccaaatgccgagttcattgatacatacactcactcagcagagggtgcaccaatccccttgaagaatgcagtttgtatttttgaacaatataacagtat |
48834103 |
T |
|
| Q |
221 |
catgtggcgtcacactgaaactggcattcctaatgagttcgtaaga |
266 |
Q |
| |
|
|||||||||||||| |||||| |||||| || |||| ||||||||| |
|
|
| T |
48834104 |
catgtggcgtcacattgaaaccggcatttctgatgaattcgtaaga |
48834149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 350 - 473
Target Start/End: Complemental strand, 15825484 - 15825361
Alignment:
| Q |
350 |
tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc |
449 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15825484 |
tcgaagaatcaagaaccgaagtgaatttgattgttagaaccgtagtcactgttggaaactatgacaatgttttagattgggagttcaaaacaagtggttc |
15825385 |
T |
|
| Q |
450 |
tatcaagcctgctgtaagtattta |
473 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
15825384 |
catcaagccctctgtaagtattta |
15825361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 347 - 516
Target Start/End: Complemental strand, 48807690 - 48807523
Alignment:
| Q |
347 |
aggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtgg |
446 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
48807690 |
aggttgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgcaggaaaatatgacaatattttagaatgggagttcaaaacaagtgg |
48807591 |
T |
|
| Q |
447 |
ttctatcaagcctgctgtaagtatttagttttgtttatttgttactccatgtttactaaatgttttatat |
516 |
Q |
| |
|
||| || ||||| | |||| ||||||| ||| |||||||||| || | ||||||||| |||||||||| |
|
|
| T |
48807590 |
ttcgataaagccctccgtaa-tatttag-tttatttatttgtttttctaggtttactaattgttttatat |
48807523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 48789943 - 48789840
Alignment:
| Q |
352 |
gaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttcta |
451 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
48789943 |
gaagagtctagaactgaagtgaatttgattgttagaactgtagtcacggtaggaaactatgacaatgttttagattgggagttcaaaacaagtggttcca |
48789844 |
T |
|
| Q |
452 |
tcaa |
455 |
Q |
| |
|
|||| |
|
|
| T |
48789843 |
tcaa |
48789840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 647 - 716
Target Start/End: Complemental strand, 48804535 - 48804467
Alignment:
| Q |
647 |
aagatatggttcttcataaacacgttcatttcattcccaatcttcgagggagtttaccaagcgggtcact |
716 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
48804535 |
aagatatggttcttcataaacatgtg-atttcatccccaatccgcgagggagtttaccaagcgggccact |
48804467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 458
Target Start/End: Original strand, 48834277 - 48834385
Alignment:
| Q |
350 |
tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc |
449 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| || || | ||||| || || || ||||| ||||| | |||||||||||||||||||||||||||| |
|
|
| T |
48834277 |
tcgaagaatcaagaaccgaagtaaacttgatagtgaggagtgtagttacagttggcaactatgacaacatcatagattgggagttcaaagcaagtggttc |
48834376 |
T |
|
| Q |
450 |
tatcaagcc |
458 |
Q |
| |
|
|||||||| |
|
|
| T |
48834377 |
catcaagcc |
48834385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 555 - 591
Target Start/End: Complemental strand, 48806181 - 48806145
Alignment:
| Q |
555 |
aaaacagattttgtaataaaataatacatataaaaaa |
591 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48806181 |
aaaacagattttgtaataaaataatgcatataaaaaa |
48806145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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