View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_32 (Length: 352)
Name: NF21279_low_32
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11711367 - 11711154
Alignment:
| Q |
1 |
tctttcagtggtttggcggataaagggtgaagagcacacaattcctaattaatttaaattaacatgagatgaaaagagataaggactatcacttactcac |
100 |
Q |
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| T |
11711367 |
tctttcagtggtttggcagataaagggtgaagagcacacaattcctaattaatttaaattaacatgagatgaaaagagataaggactatcacttactcac |
11711268 |
T |
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| Q |
101 |
aagtaannnnnnnnnnnnnnacgcacttgcacatgatcttaaattaataatataagtagctagctccatgcagctgacatgagaagatcttactggcatg |
200 |
Q |
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| T |
11711267 |
aagtaa--gtgtgtgtgtgtacgcacttgcacatgatcttaaattaataatataagtagctagctccatgcagctgacatgagaagatcttactggcatg |
11711170 |
T |
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| Q |
201 |
atgaatatgcatgtgt |
216 |
Q |
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| T |
11711169 |
atgaatatgcatgtgt |
11711154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 209 - 302
Target Start/End: Original strand, 11710953 - 11711046
Alignment:
| Q |
209 |
gcatgtgttagttaggttatgcagtttatagctttgaaaaacacatcagaattagaattgggctgtgagattgaggagttaacagcatatccaa |
302 |
Q |
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| T |
11710953 |
gcatgtgttagttaggttatgcagtttatagctttgaaaaacacatcagaattagaattgggctgtgagattgaggagttaacagcatatccaa |
11711046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 11710870 - 11710822
Alignment:
| Q |
304 |
caaactttcaacagaagtctatccaaaacaacatggcttttttcatacc |
352 |
Q |
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| T |
11710870 |
caaactttcaaaagtagtctatccaaaaaagcatggcttttttcatacc |
11710822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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