View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_34 (Length: 308)
Name: NF21279_low_34
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 3038308 - 3038592
Alignment:
| Q |
15 |
aaaatgaaggaagaagctatgtcacctgtatctctttagaagccttagcttatgataaaactcttttagggctgcgctaagttgctcatctgctttccta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3038308 |
aaaatgaaggaagaagctatgtcacctgtatctctttagaagccttagcttatgataaaactcttttagggctgcgctaagttgctcatctgctttccta |
3038407 |
T |
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| Q |
115 |
agttctttcttgttaaattctatgttagattttgaacttacaagaatcccttttatggttgatacaggagtttctggtgtgatcacattgatcttcacat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3038408 |
agttctttcttgttaaattctatgttagattttgaacttacaagaatcccttttatggttgatacaggagtttctggtgtgatcacattgatcttcacat |
3038507 |
T |
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| Q |
215 |
ggtcaagaatctctaaaggagctggtctaaaaccctgtatggaagtcttggaattaatttgtgccgcatgatttatatcttcatc |
299 |
Q |
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| T |
3038508 |
gatcaagaatctctaaaggagctggtctaaaaccctgtatggaagtcttggaattagtttgtgccgcatgatttatatcttcatc |
3038592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 3019949 - 3020233
Alignment:
| Q |
15 |
aaaatgaaggaagaagctatgtcacctgtatctctttagaagccttagcttatgataaaactcttttagggctgcgctaagttgctcatctgctttccta |
114 |
Q |
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|||| |||||||||| | |||||||||||||| ||||||||||| ||||||||||| || || |||| ||||| |||||||||| |||||||||||||| |
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| T |
3019949 |
aaaacgaaggaagaaaccatgtcacctgtatcgttttagaagcctaagcttatgatagaattcctttaaggctgtgctaagttgcacatctgctttccta |
3020048 |
T |
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| Q |
115 |
agttctttcttgttaaattctatgttagattttgaacttacaagaatcccttttatggttgatacaggagtttctggtgtgatcacattgatcttcacat |
214 |
Q |
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| T |
3020049 |
agctctttcttgctaaatgtttggtcagattttgaacttaacagaagccctttgatggttgaaacaggagtttctggtgttatcacattgatcttcacat |
3020148 |
T |
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| Q |
215 |
ggtcaagaatctctaaaggagctggtctaaaaccctgtatggaagtcttggaattaatttgtgccgcatgatttatatcttcatc |
299 |
Q |
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| ||||| ||||| |||| ||||||| |||| |||| | |||||| ||||||||| |||||||| ||| |||| ||||||||| |
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| T |
3020149 |
gatcaaggatctccaaagaagctggtttaaatccctctgtggaagacttggaattggtttgtgccacataatttccatcttcatc |
3020233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 3009893 - 3010143
Alignment:
| Q |
19 |
tgaaggaagaagctatgtcacctgtatctctttagaagccttagcttatgataaaactcttttagggctgcgctaagttgctcatctgctttcctaagtt |
118 |
Q |
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|||| |||||||| ||||||||||||||| ||||||||||| ||||||| ||| || || |||| |||| ||||| |||||||||||||||||| |||| |
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| T |
3009893 |
tgaatgaagaagccatgtcacctgtatctttttagaagcctaagcttattatagaattcctttaaggctttgctaatttgctcatctgctttcctgagtt |
3009992 |
T |
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| Q |
119 |
ctttcttgttaaattctatgttagattttgaacttacaagaatcccttttatggttgatacaggagtttctggtgtgatcacattgatcttcacatggtc |
218 |
Q |
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| T |
3009993 |
cattcttgctaaatgttttgtcagattttgcacttaagagaagcccttttatggttgatacaggagtatctggtgcgttcacattgatcttcacatgatc |
3010092 |
T |
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| Q |
219 |
aagaatctctaaaggagctggtctaaaaccctgtatggaagtcttggaatt |
269 |
Q |
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||| || || ||| |||||||||||| |||| | |||||||||||||||| |
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| T |
3010093 |
aaggatatcgaaaaaagctggtctaaatccctctgtggaagtcttggaatt |
3010143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 20059032 - 20058745
Alignment:
| Q |
15 |
aaaatgaaggaagaagctatgtcacctgtatctctttagaagccttagcttatgataaaactcttttagggctgcgctaagttgctcatctgctttccta |
114 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| |
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| T |
20059032 |
aaaatgaaggaagaagctatgtcacctgtatctttttagaagccttagcttatgataaaactctttcaaggctgcgctaagctgctcatctgctttccta |
20058933 |
T |
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| Q |
115 |
agttctttcttgttaaattctatgttagattttgaacttacaagaatcccttttatggttgatacaggagtttctggtgtgatcacattgatcttcacat |
214 |
Q |
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|| |||||||||||||||||||||| || ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20058932 |
agctctttcttgttaaattctatgtcaggttttgaatttaagagaagcccttttatggttgatacaggagtttctggtgtgatcacattgatcttcacat |
20058833 |
T |
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| Q |
215 |
ggtcaagaatctctaaaggagctggtctaaaaccctgtatggaa---gtcttggaattaatttgtgccgcatgatttatatcttcatc |
299 |
Q |
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| |||||||||||||||||||||||||||||||||| ||||||| || || |||||| |||||||| || ||||| ||||||||| |
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| T |
20058832 |
gatcaagaatctctaaaggagctggtctaaaaccctctatggaatttgtgttagaattagtttgtgccacacgatttccatcttcatc |
20058745 |
T |
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