View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_35 (Length: 287)
Name: NF21279_low_35
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_35 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 7043363 - 7043101
Alignment:
| Q |
11 |
aatgagattcatattacaagcaaactctctccattctcttctctttctaacttcaacagttttgtttgttattcttcatcttgcctaaaacaacttattg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7043363 |
aatgagattcatattacaagcaaactctctccattctcttctctttctaacttcaacagttttgtttgttattcttcatcttgcttaaaacaacttattg |
7043264 |
T |
|
| Q |
111 |
agaaaagcacttatgctgcgttttaagatcatagtttgatttaacaattggtatcagagcttggttaaatctaagggaaacacgagtgaagtttaaggga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7043263 |
agaaaagcacttatgctgcgttttaagatcatagtttgatttaacaattggtatcagagcttggttaaatctaagggaaacacgagtgaagtttgaggga |
7043164 |
T |
|
| Q |
211 |
aatcattatgggatactctgagtgaggtgtgagtcttgatttcttgataagcaagatgaataa |
273 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7043163 |
aatcattatgggaaactctgagtgaggtgtgagtcttgatttcttgataagcaagatgaataa |
7043101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 25170485 - 25170585
Alignment:
| Q |
173 |
ggttaaatctaagggaaacacgagtgaagtttaagggaaatcatta-tgggatactctgagtgaggtgtgagtcttgatttcttgataagcaagatgaat |
271 |
Q |
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|||||||| |||||||||||||||||||| | |||| |||||| | ||||| || |||||| ||||||||| |||||||||| ||||||||||||| |
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| T |
25170485 |
ggttaaattcaagggaaacacgagtgaagtgtgaggggaatcatcattgggaaacactgagtaaggtgtgagcattgatttcttagaaagcaagatgaat |
25170584 |
T |
|
| Q |
272 |
a |
272 |
Q |
| |
|
| |
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|
| T |
25170585 |
a |
25170585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 28964819 - 28964775
Alignment:
| Q |
11 |
aatgagattcata-ttacaagcaaactctctccattctcttctct |
54 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
28964819 |
aatgagattcacaattacaagcaaactctctccattctcttctct |
28964775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 59334 - 59233
Alignment:
| Q |
173 |
ggttaaatctaagggaaacacgagtgaagtttaagggaaatcatta-tgggatactctgagtgaggtgtgagtcttgatttcttga-taagcaagatgaa |
270 |
Q |
| |
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||||||||| |||||||||||||||||||| | |||| |||||| | || || || ||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
59334 |
ggttaaatccaagggaaacacgagtgaagtgtgaggggaatcatcattgagaaacactgagtgaggtgtgagtattgatttcttgagaaagcaagatgaa |
59235 |
T |
|
| Q |
271 |
ta |
272 |
Q |
| |
|
|| |
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|
| T |
59234 |
ta |
59233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 293434 - 293536
Alignment:
| Q |
152 |
taacaattggtatcagagcttggttaaatctaagggaaacacgagtgaagtttaagggaaatcattatgggatactctgagtgaggtgtgagtcttgatt |
251 |
Q |
| |
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|||| |||||||||||||| | ||||||||| ||||||||||||||||| | |||| |||||| || || || |||||||||||||| || |||||| |
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| T |
293434 |
taaccattggtatcagagcctagttaaatcttagggaaacacgagtgaatagtgaggggaatcatcattggtaacactgagtgaggtgtgtgtattgatt |
293533 |
T |
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| Q |
252 |
tct |
254 |
Q |
| |
|
||| |
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|
| T |
293534 |
tct |
293536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 8266161 - 8266261
Alignment:
| Q |
175 |
ttaaatctaagggaaacacgagtgaagtttaagggaaatcat-tatgggatactctgagtgaggtgtgagtcttgatttcttga-taagcaagatgaata |
272 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||| |||||| ||||| || ||||||||||||| || | |||||||||| |||||||||||||| |
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| T |
8266161 |
ttaaatctaagggaaacacaagtgaagtgtgaggggaatcatcgttgggaaacactgagtgaggtgtaagcatagatttcttgagaaagcaagatgaata |
8266260 |
T |
|
| Q |
273 |
a |
273 |
Q |
| |
|
| |
|
|
| T |
8266261 |
a |
8266261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 1663400 - 1663514
Alignment:
| Q |
11 |
aatgagattcata-ttacaagcaaactctctccattctcttctctttctaacttcaacagttttgtttgttattct-tcatcttgcctaaaacaacttat |
108 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||| | ||||||||| |||| || ||||| |
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| T |
1663400 |
aatgagattcacaattacaagcaaactctctccattctcttctctgtcagtctt--acaagtttgtttgttattttctcatcttgcttaaaccagcttat |
1663497 |
T |
|
| Q |
109 |
tgagaaaagcacttatg |
125 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
1663498 |
tctgaaaagcacttatg |
1663514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 25590667 - 25590566
Alignment:
| Q |
173 |
ggttaaatctaagggaaacacgagtgaagtttaagggaaatcatt-atgggatactctgagtgaggtgtgagtcttgatttcttg-ataagcaagatgaa |
270 |
Q |
| |
|
||||||||| |||||||| ||||||||||| | |||| ||||||| ||||| || ||||| ||||||||| ||||||||||| | |||||||||||| |
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| T |
25590667 |
ggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattgagtcaggtgtgagcattgatttcttgaaaaagcaagatgaa |
25590568 |
T |
|
| Q |
271 |
ta |
272 |
Q |
| |
|
|| |
|
|
| T |
25590567 |
ta |
25590566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 22664646 - 22664561
Alignment:
| Q |
173 |
ggttaaatctaagggaaacacgagtgaagtttaagggaaatcatta-tgggatactctgagtgaggtgtgagtcttgatttcttga |
257 |
Q |
| |
|
|||| ||||||||||||||| || |||||| |||||| |||||| | ||| | || |||||||||||||| | |||||||||||| |
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|
| T |
22664646 |
ggttcaatctaagggaaacatgaatgaagtgtaaggggaatcatcattggaaaacactgagtgaggtgtgtgcattgatttcttga |
22664561 |
T |
|
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