View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_36 (Length: 279)
Name: NF21279_low_36
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_36 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 35225168 - 35224890
Alignment:
| Q |
4 |
actcactcacacagtcttatataccttctttagttttgtttctaccaaatgttacagaacttataaacatattttggtccttgaattgtagcattgtatc |
103 |
Q |
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| T |
35225168 |
actcactcacacagtcttatataccttctttagttttgtttctaccaaatgttacagaacttataagcatattttggtccttgaattgtagcattgtatc |
35225069 |
T |
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| Q |
104 |
aacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatattaatcagatttgtccc-nnnnnnngatatgttatcaaa--catt |
200 |
Q |
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| T |
35225068 |
aacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatattaatcagatttgtccctttgtcttgatatgttatcaaatgcatt |
35224969 |
T |
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| Q |
201 |
ccaattgaagaacgaacttgattagcatcttaaaattccagaaagacattgaaatgatgtcaaagttatctattaagct |
279 |
Q |
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| T |
35224968 |
ccaattgaagatcgaacttgattagcatcttaaaactccagaaagacattgaaatgacgtcaaagttatctattaagct |
35224890 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 9650894 - 9650831
Alignment:
| Q |
97 |
ttgtatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatatt |
160 |
Q |
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| T |
9650894 |
ttgtatcaacctagccccccacattatcaataatccaaaatcgtctatggaattgcaaaatatt |
9650831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 24917727 - 24917786
Alignment:
| Q |
100 |
tatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatat |
159 |
Q |
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| T |
24917727 |
tatcaacctagtcctccctattatcaatattccaaaatgatccctggaattgcaaaatat |
24917786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 24993637 - 24993696
Alignment:
| Q |
100 |
tatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatat |
159 |
Q |
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| T |
24993637 |
tatcaacctagtcctccctattatcaatattccaaaatgatccctggaattgcaaaatat |
24993696 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 26270983 - 26270906
Alignment:
| Q |
87 |
aattgtagcattgtatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatattaatc |
164 |
Q |
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| T |
26270983 |
aattgtatgattgtatcaatctaatctctcacattatcaatattccaaaatgatcattggaattgcaaaatattaatc |
26270906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 55570873 - 55570960
Alignment:
| Q |
87 |
aattgtagcattgtatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatattaatcagatttgtccc |
175 |
Q |
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| T |
55570873 |
aattgtaggatggtatcaacctagtcct-cacattattaatatttcaaaatgatttagtgaattgcaaaatgttaatcaggcttgtccc |
55570960 |
T |
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