View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21279_low_37 (Length: 267)
Name: NF21279_low_37
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 41447226 - 41446987
Alignment:
| Q |
18 |
acctcaagggatgcagcgacaacaagtaattttatgatattatatttttgttcaacaactgtgatttccttgattaatcggtcgaacacttccttcactg |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447226 |
acctcaagggatgcagcgacaacaagtgattttatgatattatatttttcttcaacaactgtgatttccttgattaatcggtcgaacacttccttcactg |
41447127 |
T |
|
| Q |
118 |
aagacagtatgttcttgttcaaggattttttccattgaacttgaaggaatggaatttgatgatacaatggaaggatcaatatgcaatactgcagatttct |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447126 |
aaaacagtatgttcttgttcaaggattttttccattgaacttgaaggaatagaatttgatgatacaatggaaggatcaatatgcaatactgcagatttct |
41447027 |
T |
|
| Q |
218 |
ccatgacattgtcccaggatgctatgttgcatgctctctg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447026 |
ccatgacattgtcccaggatgctatgttgcatgctctctg |
41446987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 48 - 257
Target Start/End: Complemental strand, 41457383 - 41457169
Alignment:
| Q |
48 |
tttatgatattatatttttgttcaacaactgtgatttccttgattaatcggtcgaacacttccttcactgaagacagtatgttcttgttcaaggattttt |
147 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41457383 |
tttattatattatatttttcttcaacaactgtgatttctttgattaaccggtcgaacacttccttcactgaagacagtatgttcttgttcaaggatgttt |
41457284 |
T |
|
| Q |
148 |
tccattgaacttgaaggaatggaatttgatgatacaatggaaggatcaatatgcaatactgcagatttctccatga-----cattgtcccaggatgctat |
242 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
41457283 |
cccattgaacttgaaggaatagaattagatgatacaagggaaggatcaatatgcaaaactgcagatttctccatgacattacattgtcccaagatgctat |
41457184 |
T |
|
| Q |
243 |
gttgcatgctctctg |
257 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
41457183 |
gttgcgtgctctctg |
41457169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 37456113 - 37456220
Alignment:
| Q |
150 |
cattgaacttgaaggaatggaatttgatgatacaatggaaggatcaatatgcaatactgcagatttctccatgacattgtcccaggatgctatgttgcat |
249 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||| ||||||||| ||||| | ||| |||||| |||||||||||||||||||| |||||| | | |
|
|
| T |
37456113 |
cattgaacttgatggaaaagaataggatgatacaggggaaggatcggtatgcgttcctgaagatttatccatgacattgtcccaggaccctatgtcgagt |
37456212 |
T |
|
| Q |
250 |
gctctctg |
257 |
Q |
| |
|
|||||||| |
|
|
| T |
37456213 |
gctctctg |
37456220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 18979609 - 18979651
Alignment:
| Q |
54 |
atattatatttttgttcaacaactgtgatttccttgattaatc |
96 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
18979609 |
atattatatttttcatcaacaagtgtgatttccttgattaatc |
18979651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 16238627 - 16238587
Alignment:
| Q |
206 |
ctgcagatttctccatgacattgtcccaggatgctatgttg |
246 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
16238627 |
ctgcatatttctccatgacattgtcccagaaggctatgttg |
16238587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 18988074 - 18988114
Alignment:
| Q |
56 |
attatatttttgttcaacaactgtgatttccttgattaatc |
96 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
18988074 |
attatatttttcatcaacaagtgtgatttccttgattaatc |
18988114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University