View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_5 (Length: 603)
Name: NF21279_low_5
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 125 - 603
Target Start/End: Original strand, 56160090 - 56160565
Alignment:
| Q |
125 |
atttgagttgacttggaatcttttaggccaaggtatgtaaca----tataaccaacacaccttcctttgtacgtacaacatatgcttgccttcgattttt |
220 |
Q |
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| T |
56160090 |
atttgagttgacttggaatcttttcggccaaggtatgtaacaaacatataaccaacacaccttcctttgtac----aacatatgcttgccttcgattttt |
56160185 |
T |
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| Q |
221 |
cgtctacaatctcaaataagcataagtgatgagccatagagaaattaaattaaagagcgattgattatataagttgatgacatgaacaaaacattatatg |
320 |
Q |
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| T |
56160186 |
cgtctacaatctcaaataagcataagtgatgagccatagagaaattaaattaaagac------------------gatgacatgaacaaaacattatatg |
56160267 |
T |
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| Q |
321 |
tgatgccaactaagcatgataat---------gagtgcttgcactactacgatgatgaaatctccagttgtggttgtggttttattgggttcaagaaaag |
411 |
Q |
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| T |
56160268 |
tgatgccaactaagcatgatattaaagatgttgagtgcttgcactactacgatgatgaaatctccagttgtggttgtggttttattgggttcaagaaaag |
56160367 |
T |
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| Q |
412 |
ccaagtgtttgattacaatttcgg------catcgatgatggtgattcagaagagctgtttgagataaatatgaagaaggaaagtagattggattcaata |
505 |
Q |
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| T |
56160368 |
ccaagtatttgattacaatttcggagacgacgacgatgatggtgattcagaagagctgtttgagataaatatgaagaaggaaagtagattggattcaata |
56160467 |
T |
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| Q |
506 |
agagaagaagagtggtgtgagagcagtactgtgttctctatagatatacacaattatttagatgatgttgtttatgtggcagtgggaacaaatattaa |
603 |
Q |
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| T |
56160468 |
agagaagaagagtggtgtgagagcagtactgtgttctctctagatatacacaattatttagatgatgttgtttatgtggcagtgggaacaaatattaa |
56160565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 56160031 - 56160088
Alignment:
| Q |
3 |
ctattaatgtcgtgtgatgctttggcacgctaaactatccgtaatattgattttttaa |
60 |
Q |
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| T |
56160031 |
ctattaatgtcgtgtgatgctttggcacgctaaactatccgtaatattgatcttttaa |
56160088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 38933400 - 38933441
Alignment:
| Q |
300 |
acatgaacaaaacattatatgtgatgccaactaagcatgata |
341 |
Q |
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| T |
38933400 |
acatggacaaaacattatatgtgatgccaactaagcatgata |
38933441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 38933315 - 38933354
Alignment:
| Q |
200 |
atatgcttgccttcgatttttcgtctacaatctcaaataa |
239 |
Q |
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| T |
38933315 |
atatgcttgccttcaatttttcgtctacaatctcaaataa |
38933354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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