View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21279_low_7 (Length: 530)
Name: NF21279_low_7
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 13 - 512
Target Start/End: Original strand, 25356921 - 25357420
Alignment:
| Q |
13 |
atccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggttagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25356921 |
atccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggttagg |
25357020 |
T |
|
| Q |
113 |
gtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcattctggttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25357021 |
gtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcattctggttg |
25357120 |
T |
|
| Q |
213 |
agaggctctccatcaacaagcacttctggttgttgttgctctaattctttggtaatcttataacatgcatcgcgtctttttgtttttctctttgctgatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25357121 |
agaggctctccatcaacaagcacttctggttgttgttgatctaattctttggtaatcttataacatgcatcgcgtctttttgtttttctctttgctgctt |
25357220 |
T |
|
| Q |
313 |
catttggtttaacattgcttagagcatttcccttaggcctcccctgatataacaaacacattatcaagttagataaaacaaacacaaaaacaaagttgaa |
412 |
Q |
| |
|
| |||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25357221 |
cgtttggtttaacattgcttagagtgtttaccttaggcctcccctgatataacaagcacattagcaagttagataaaacaaacacaaaaacaaagaagaa |
25357320 |
T |
|
| Q |
413 |
caattaatttagcagaataaaacaataaaattaccctcttcttaggttcttgattgatattgtgtttaaccaagacttccttaacccacttagacctgga |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25357321 |
caattaatttagcagaataaaacaataaaattaccctcttgttaggttcttgattgatattgtgtttaaccaagacttccttaacccacttagacctgga |
25357420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 512
Target Start/End: Original strand, 25352249 - 25352746
Alignment:
| Q |
10 |
aatatccaagagaggtgttacataaagtccattattaagtaactaa-taagaattgaaataaaatgaagatatgaagactcacataagatggtaaagg-- |
106 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25352249 |
aatatccaagagatgtgttacagaaagtacattatatattaagtaactaagaattgaaataaaatgaagatatgaagactcacataagatggtacaggcg |
25352348 |
T |
|
| Q |
107 |
-gttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcatt |
205 |
Q |
| |
|
|||||||||||||| |||||||| ||| || ||||||| ||||||||||| |||||||| ||| |||||| |||| ||||| |||| || ||| |
|
|
| T |
25352349 |
ggttagggtcagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcagatacttcttgatt |
25352448 |
T |
|
| Q |
206 |
ctggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattctttggtaatcttataacatgcatcgcg---tctttttgtttttctc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25352449 |
atggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctttttgtttttctc |
25352548 |
T |
|
| Q |
303 |
tttgctgattcatttggtttaacattgcttagagcatttcccttaggcctcccctgatataacaaacacattatcaagttagataaaacaaacacaaaaa |
402 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
25352549 |
tttgctgcttcatttggtttaacattgcttagagtgttt------------acctgatataacaaacacattagcaagttagataaaactaacacaaaaa |
25352636 |
T |
|
| Q |
403 |
caaagttgaacaattaatttagcagaataaaacaataaaattaccctcttcttaggttcttgattgatattgtgtttaaccaagacttccttaacccact |
502 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
25352637 |
caaaaaacaacaattaatttagcagaataaaactataaaattaccctctttttaggttcttgtttgatattgtgtttaaccaagactttcgcaacccact |
25352736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 25349713 - 25349846
Alignment:
| Q |
10 |
aatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggtt |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25349713 |
aatatccaagaaaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggt- |
25349811 |
T |
|
| Q |
110 |
agggtcagcagttgttggtacaaggttcactacagaaa |
147 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||| |
|
|
| T |
25349812 |
-gggtcagc--ttgttggtacaagatttactacagaaa |
25349846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 25361584 - 25361649
Alignment:
| Q |
10 |
aatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaaga |
78 |
Q |
| |
|
||||||||| |||| |||||||||||||| |||||| |||||| || |||||||||||||||||||| |
|
|
| T |
25361584 |
aatatccaatagagatgttacataaagtctattattgagtaac---tacgaattgaaataaaatgaaga |
25361649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 371
Target Start/End: Complemental strand, 25356495 - 25356410
Alignment:
| Q |
286 |
gtctttttgtttttctctttgctgattcatttggtttaacattgcttagagcatttcccttaggcctcccctgatataacaaacac |
371 |
Q |
| |
|
||||| |||||||| ||||| || |||||||||||| ||||| |||| || |||| |||||||||| ||| |||||| |||||| |
|
|
| T |
25356495 |
gtcttattgtttttttctttcttggttcatttggtttgacattacttaaagtattttccttaggcctttcctaatataaaaaacac |
25356410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University