View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_low_8 (Length: 525)
Name: NF21279_low_8
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Complemental strand, 52972850 - 52972362
Alignment:
| Q |
17 |
taactaaggtggtatggtggtatttatctccactcaactcacacacacacgtatatataaagtgtgatgacatattctcatctcataaaaataaaaggaa |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52972850 |
taactaaggtggtatggt---atttatctccactcaactcacacacacacatatatataaagtgtgatgacatattctcatctcatgaaaataaaaggaa |
52972754 |
T |
|
| Q |
117 |
ataagtgatgagtttcatgtcctccttcgaggcatggacgtaacatttccgacnnnnnnntcgtcaatcaatgtctcaatgtcgtcgggatgatacttta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
52972753 |
ataagtgatgagtttcatgtcctccttcgaggcatggacgtaacatttccaacaaaaaaatcgtcaatcaatgtctcaatgtcgtcgggatgatacttta |
52972654 |
T |
|
| Q |
217 |
tgtacttgtcaatatgtcttcctgtttctagatgatgtttaaatcttcccataaaggagcgatacgcaggtatgaccaaggcagatattgaaactcttaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972653 |
tgtacttgtcaatatgtcttcctgtttctagatgatgtttaaatcttcccataaaggagcgatacgcaggtatgaccaaggcagatattgaaactcttaa |
52972554 |
T |
|
| Q |
317 |
ctctgattgaagttgttcatcgctcaccatccaactactttgcgtcttgtggatatcttcaaacatggaattgaaacacttaaacctctctctcaaaacc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972553 |
ctctgattgaagttgttcatcgctcaccatccaactactttgcgtcttgtggatatcttcaaacatggaattgaaacacttaaacctctctctcaaaacc |
52972454 |
T |
|
| Q |
417 |
tgcttagacaccttgttcccttgttgatgaaggccatctgggttaaggcactgcaacaccttagtccaagtctctctctgataactcttatg |
508 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972453 |
tgcttagagaccttgttcccttgttgatgaaggccatctgggttaaggcactgcaacaccttagtccaagtctctctctgataactcttatg |
52972362 |
T |
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