View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21279_low_9 (Length: 522)

Name: NF21279_low_9
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21279_low_9
NF21279_low_9
[»] chr6 (7 HSPs)
chr6 (7-504)||(24992359-24992868)
chr6 (7-82)||(26182684-26182759)
chr6 (93-212)||(23260663-23260784)
chr6 (93-212)||(34636231-34636352)
chr6 (93-212)||(25005188-25005309)
chr6 (94-151)||(13777247-13777304)
chr6 (95-212)||(32450348-32450467)
[»] chr8 (4 HSPs)
chr8 (115-212)||(35839167-35839266)
chr8 (110-154)||(40841550-40841594)
chr8 (115-153)||(22816485-22816523)
chr8 (147-212)||(22816401-22816466)
[»] chr2 (6 HSPs)
chr2 (110-212)||(1193659-1193763)
chr2 (110-201)||(29270696-29270787)
chr2 (94-151)||(28267692-28267749)
chr2 (110-169)||(44788576-44788635)
chr2 (94-151)||(12774954-12775011)
chr2 (93-151)||(32735438-32735498)
[»] chr5 (7 HSPs)
chr5 (115-212)||(27026687-27026786)
chr5 (93-201)||(536774-536884)
chr5 (110-169)||(6308684-6308743)
chr5 (161-212)||(6308759-6308810)
chr5 (105-148)||(40687600-40687643)
chr5 (94-199)||(4558070-4558178)
chr5 (160-212)||(536927-536979)
[»] chr4 (8 HSPs)
chr4 (94-201)||(28969279-28969386)
chr4 (94-167)||(41868614-41868687)
chr4 (110-169)||(69311-69370)
chr4 (147-212)||(69373-69438)
chr4 (179-280)||(41868764-41868866)
chr4 (95-148)||(55162182-55162235)
chr4 (95-148)||(40458951-40459004)
chr4 (94-211)||(49499057-49499176)
[»] chr3 (8 HSPs)
chr3 (110-212)||(17542752-17542854)
chr3 (93-212)||(5004805-5004926)
chr3 (110-212)||(9104235-9104337)
chr3 (93-212)||(46404647-46404768)
chr3 (93-212)||(16975298-16975419)
chr3 (93-212)||(8730845-8730964)
chr3 (93-212)||(9082732-9082851)
chr3 (93-150)||(16475322-16475381)
[»] scaffold0413 (1 HSPs)
scaffold0413 (93-212)||(8884-9005)
[»] chr1 (7 HSPs)
chr1 (94-212)||(9537441-9537559)
chr1 (100-151)||(18474080-18474131)
chr1 (110-169)||(21264718-21264779)
chr1 (93-185)||(35762164-35762258)
chr1 (95-148)||(8421619-8421672)
chr1 (93-151)||(37667296-37667356)
chr1 (110-153)||(6836013-6836058)
[»] chr7 (8 HSPs)
chr7 (115-212)||(9993357-9993454)
chr7 (93-212)||(15874022-15874143)
chr7 (94-151)||(48654376-48654433)
chr7 (94-212)||(22077678-22077796)
chr7 (94-212)||(21491581-21491703)
chr7 (136-212)||(11036406-11036485)
chr7 (95-148)||(49170428-49170481)
chr7 (93-212)||(12196655-12196772)
[»] scaffold1838 (1 HSPs)
scaffold1838 (94-212)||(221-339)
[»] scaffold0013 (2 HSPs)
scaffold0013 (115-153)||(243168-243208)
scaffold0013 (176-212)||(243119-243155)


Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 504
Target Start/End: Original strand, 24992359 - 24992868
Alignment:
Q  7 ggagcagagatcgacgtgccttgatttagagttgttctactaggaagaaaatcgtcaatggtaagggttttttcccata---------------ctagag 91  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||               |||| |    
T  24992359 ggagcaaagatcgacgtgccttgatttagagttgttctactaggaagaaaagcgtcaatggtaagggctttttcccatatgtctatattaagtactaggg 24992458  T
Q  92 atatgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgatt 191  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  24992459 atatgttatgaattataagtagaaattcttgt-ttttgaaaagaaaaacaattaaaatatttctttacgtggtaaaatttattcttttataaaactgatt 24992557  T
Q  192 attttaattaagttttatatggtatgtgtttatgaggatttgatgtgaaataatatatctcattttatttcattatgctttatatgtttgtgatgtt--- 288  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  24992558 attttaattaagttttatatggtatgtgtttatgaggatttgatctgaaataatatatctcattttatttcattatgctttatatgtttgtgatgttaga 24992657  T
Q  289 -----aaatgttagatttttgataaattagagaaagaaaataatgttacagtactcaaaattattcttaaataaattattaagaaaaggatatgaatatg 383  Q
         |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24992658 taaagaaatgttagatttttgataaattagagaaagaaaataatgttacagtagtcaaaattattcttaaataaattattaagaaaaggatatgaatatg 24992757  T
Q  384 tatggcctctgggatatagttgctaacagttgctaaagtggttcgatttgacgannnnnnnacgcaattttattgtgttcgttgattgtggtgtcttctc 483  Q
    |||||||||||||||||          ||||||||| |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||    
T  24992758 tatggcctctgggatat----------agttgctaatgtggttcgatttgacgatttttttactcaattttattgtgttcgttgattgtggtgtcttctc 24992847  T
Q  484 tccctatttgtggttacagat 504  Q
    |||||||||||||||||||||    
T  24992848 tccctatttgtggttacagat 24992868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 26182759 - 26182684
Alignment:
Q  7 ggagcagagatcgacgtgccttgatttagagttgttctactaggaagaaaatcgtcaatggtaagggttttttccc 82  Q
    |||||| |||| || |||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  26182759 ggagcaaagattgatgtgccttgatatagagttgctcgactaggaagaaaatcgtcaatggtaagggctttttccc 26182684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 23260784 - 23260663
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    |||||||||||||||| ||||| |||||||||| |||||||||  ||||||| ||||||||    | | |||||||||||||  ||||||||||||| ||    
T  23260784 tatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttagccttttataaaagttat 23260685  T
Q  191 tattttaattaagttttatatg 212  Q
    || ||||||||  |||||||||    
T  23260684 tagtttaattatattttatatg 23260663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 34636231 - 34636352
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    |||||||||||||||| ||||| |||||||||| |||||||||  ||||||| ||||||||    | | |||||||||||||  ||||||||||||| ||    
T  34636231 tatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttat 34636330  T
Q  191 tattttaattaagttttatatg 212  Q
    || ||||||||  |||||||||    
T  34636331 tagtttaattatattttatatg 34636352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 25005188 - 25005309
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    |||||||||||||||| ||||| |||||||||| |||||||||  ||||||| |||||||     | | |||||||||||||  ||||||||||||| ||    
T  25005188 tatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaataagaattcatatggtaaaatttaaccttttataaaagttat 25005287  T
Q  191 tattttaattaagttttatatg 212  Q
    || ||||||||  |||||||||    
T  25005288 tagtttaattatattttatatg 25005309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 13777304 - 13777247
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatat 151  Q
    ||||| ||||||||||||| |||||||| ||||||| |||||||||||| ||||||||    
T  13777304 atgttgtgaattagaagtacaaattcttatcttttggaaagaaaaacaactaaaatat 13777247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 32450467 - 32450348
Alignment:
Q  95 tgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgatta 192  Q
    |||||||||||||| ||||| |||||||||| |||||||||  ||||||| ||||||||    | | |||||||| ||||   |||||||||||| ||||    
T  32450467 tgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaattttaactttttataaaagttatta 32450368  T
Q  193 ttttaattaagttttatatg 212  Q
     ||||||||  |||||||||    
T  32450367 gtttaattatattttatatg 32450348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 35839167 - 35839266
Alignment:
Q  115 aattcttgtcttttgaaaagaa--aaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 212  Q
    ||||||||||||||||||||||  |||||||||||||||||  |||||||||||||| || | |||||||| |||||||||||||||| |||||||||||    
T  35839167 aattcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatg 35839266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 40841594 - 40841550
Alignment:
Q  110 gtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttc 154  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  40841594 gtagcaattcttgtcttttgaaaagaaaaacaataaaaatatttc 40841550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 22816523 - 22816485
Alignment:
Q  115 aattcttgtcttttgaaaagaaaaacaattaaaatattt 153  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  22816523 aattcttgtctcttgaaaagaaaaacaattaaaatattt 22816485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 22816466 - 22816401
Alignment:
Q  147 aatatttcattacatggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 212  Q
    |||||||  |||| ||||||||| || | |||||||| |||||||||||||||  |||||||||||    
T  22816466 aatattttcttacgtggtaaaatctaatattttataagagtgattattttaatcgagttttatatg 22816401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 1193659 - 1193763
Alignment:
Q  110 gtagaaattcttgtcttttgaaaagaa--aaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattattttaattaagtttt 207  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||  |||||||||||| | || | |||||||| |||||||||||||||| ||||||    
T  1193659 gtagcaattcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaagtctaatattttataagagtgattattttaattgagtttt 1193758  T
Q  208 atatg 212  Q
    |||||    
T  1193759 atatg 1193763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 29270696 - 29270787
Alignment:
Q  110 gtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattattttaatta 201  Q
    |||| ||||||||||||||||||||||||||||||||||||| |  |||||| |||||||||| | |||||||||| | |||||||||||||    
T  29270696 gtagcaattcttgtcttttgaaaagaaaaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaatta 29270787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 28267749 - 28267692
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatat 151  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  28267749 atgttgtgaattagaagtacaaattcttatcttttgaaaagaaaaacaactaaaatat 28267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 44788576 - 44788635
Alignment:
Q  110 gtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaat 169  Q
    |||| |||| ||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  44788576 gtagtaattattgtcttttgaaaagaaaaacaattaaaatattttcttacgtggtaaaat 44788635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 12775011 - 12774954
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatat 151  Q
    ||||| ||||||||||||| |||||||| ||||||| |||||||||||| ||||||||    
T  12775011 atgttgtgaattagaagtacaaattcttatcttttggaaagaaaaacaactaaaatat 12774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 32735498 - 32735438
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatat 151  Q
    |||||||||||||||| ||||| |||||||||| |||||||||  ||||||| ||||||||    
T  32735498 tatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 32735438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 27026687 - 27026786
Alignment:
Q  115 aattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaat-ttattcttttataaa-agtgattattttaattaagttttatatg 212  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| | ||| ||||||||| |||||||||||||||| | |||||||||    
T  27026687 aattcttgtcttttgaaaagaaaaacaattaatatatttctttacgtggtaaaatctaatttttttataaagagtgattattttaattgatttttatatg 27026786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 536774 - 536884
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    |||||||||||||||| ||||| |||||||||| |||||||||  ||||||| ||||||||    | | |||||||||||||  ||||||||||||| ||    
T  536774 tatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttat 536873  T
Q  191 tattttaatta 201  Q
    || ||||||||    
T  536874 tagtttaatta 536884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 6308684 - 6308743
Alignment:
Q  110 gtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaat 169  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||  |||| |||||||||    
T  6308684 gtagcaattcttgtctcttgaaaagaaaaataattaaaatattttcttacgtggtaaaat 6308743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 6308759 - 6308810
Alignment:
Q  161 tggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 212  Q
    ||||||||| || | ||||||||||||||||||||||||| |||||||||||    
T  6308759 tggtaaaatctaatattttataaaagtgattattttaattgagttttatatg 6308810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 40687600 - 40687643
Alignment:
Q  105 tagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaa 148  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||    
T  40687600 tagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 40687643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 4558178 - 4558070
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaaga---aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    ||||||||| ||||| ||||| |||||||||| |||| ||||   |||| || ||||||||    ||| |||||||||||||  ||||||||||||| ||    
T  4558178 atgttatgatttagaggtagagattcttgtctgttgagaagagagaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttat 4558079  T
Q  191 tattttaat 199  Q
    || ||||||    
T  4558078 tagtttaat 4558070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 536927 - 536979
Alignment:
Q  160 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 212  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  536927 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 536979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 28969386 - 28969279
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattat 193  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||||||   ||| |||||||||||||   |||||||||||| ||||     
T  28969386 atgttatgaattagaggtagaaattcttgtctgttgagaagaaaaacaactaaaatattaatttatatggtaaaatttaacattttataaaagttattag 28969287  T
Q  194 tttaatta 201  Q
    ||||||||    
T  28969286 tttaatta 28969279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 41868614 - 41868687
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaa 167  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||||||| |||||| |  ||||||||||||    
T  41868614 atgttgtgaattagaagtagaaattcttgtctcttgaaaagataaacaattcaaatatatatttacatggtaaa 41868687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 69311 - 69370
Alignment:
Q  110 gtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaat 169  Q
    |||| ||||||||||| |||||||||||||||||||||||||||  |||| |||||||||    
T  69311 gtagcaattcttgtctcttgaaaagaaaaacaattaaaatattttcttacgtggtaaaat 69370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 69373 - 69438
Alignment:
Q  147 aatatttcattacatggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 212  Q
    |||||||  |||| ||||||||| || | ||||||||||||||||||||||||| |||||||||||    
T  69373 aatattttcttacgtggtaaaatctaatattttataaaagtgattattttaattgagttttatatg 69438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 41868764 - 41868866
Alignment:
Q  179 tataaaagtgattat-tttaattaagttttatatggtatgtgtttatgaggatttgatgtgaaataatatatctcattttatttcattatgctttatatg 277  Q
    ||||||||||||||| |||| ||| |||||||||| |   ||| |||||| || ||||||| ||| |||||| | ||||||||||||| || ||||||||    
T  41868764 tataaaagtgattatctttatttatgttttatatgatggttgtatatgagaatgtgatgtggaatgatatattttattttatttcattctgatttatatg 41868863  T
Q  278 ttt 280  Q
    |||    
T  41868864 ttt 41868866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 55162182 - 55162235
Alignment:
Q  95 tgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaa 148  Q
    |||||| || ||||||||| |||||||||||||| |||||||||| ||||||||    
T  55162182 tgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 55162235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 40458951 - 40459004
Alignment:
Q  95 tgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaa 148  Q
    |||||| || |||| |||| |||||||||||||| |||||||||| ||||||||    
T  40458951 tgttattaagtagaggtagcaattcttgtcttttaaaaagaaaaataattaaaa 40459004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 49499057 - 49499176
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaat--taaaatatttcattacatggtaaaatttattcttttataaaagtgatt 191  Q
    ||||||||||||||| || || |||||||||| |||| |||||||| ||   ||||||||    ||| || ||||||||||  ||||||||||| | |||    
T  49499057 atgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaaccttttataaaaattatt 49499156  T
Q  192 attttaattaagttttatat 211  Q
    | ||||||||  ||||||||    
T  49499157 agtttaattatattttatat 49499176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 17542854 - 17542752
Alignment:
Q  110 gtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattattttaattaagttttat 209  Q
    |||| ||||||||||| |||||||||||||||||||||||||||  |||| ||||||||| || | |||| ||| |||| ||||||||||| ||||||||    
T  17542854 gtagcaattcttgtctcttgaaaagaaaaacaattaaaatattttcttacgtggtaaaatctaatattttctaagagtggttattttaattgagttttat 17542755  T
Q  210 atg 212  Q
    |||    
T  17542754 atg 17542752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 5004926 - 5004805
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    |||||||||||||||| ||||| ||||||||||||||||||||  ||||||| ||||||||    ||| ||||| |||||||  ||||||||||||| ||    
T  5004926 tatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaactaaaatatgaatttatatggtgaaatttaaccttttataaaagttat 5004827  T
Q  191 tattttaattaagttttatatg 212  Q
    || ||||||||  |||||||||    
T  5004826 tagtttaattatattttatatg 5004805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 9104235 - 9104337
Alignment:
Q  110 gtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattattttaattaagttttat 209  Q
    |||| ||||||||||||||||||||||||||||| |||||||||| | |  ||||||||| || | |||||||| | |||||||||||||| ||| ||||    
T  9104235 gtagcaattcttgtcttttgaaaagaaaaacaataaaaatatttcttaatgtggtaaaatctaatattttataagattgattattttaattgagtcttat 9104334  T
Q  210 atg 212  Q
    |||    
T  9104335 atg 9104337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 46404768 - 46404647
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    |||||||||||||||| ||||| |||||||||| |||||||||  ||||||| ||||||||    | | |||||||||||||  ||||||||||||| ||    
T  46404768 tatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttat 46404669  T
Q  191 tattttaattaagttttatatg 212  Q
    || ||||||||  |||||||||    
T  46404668 tagtttaattatattttatatg 46404647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 16975298 - 16975419
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    |||||||||||||||| ||||| |||||||| | |||||||||  ||||||| ||||||||    | | |||||||||||||  ||||||||||||| ||    
T  16975298 tatgttatgaattagaggtagagattcttgtttgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttat 16975397  T
Q  191 tattttaattaagttttatatg 212  Q
    || ||||||||  |||||||||    
T  16975398 tagtttaattatattttatatg 16975419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 8730845 - 8730964
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgatt- 191  Q
    |||||||| || ||| ||| | |||||||||||||| |||||||||| || |||||| | |  || || ||||||||||| |||||||||||||| |||     
T  8730845 tatgttattaaatagtagtggtaattcttgtcttttaaaaagaaaaataa-taaaatgtatattttcagggtaaaatttaatcttttataaaagttatta 8730943  T
Q  192 attttaattaagttttatatg 212  Q
    ||| | |||| ||||||||||    
T  8730944 attctcattatgttttatatg 8730964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 9082732 - 9082851
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgatt- 191  Q
    |||||||| || ||| ||| | |||||||||||||| |||||||||| || |||||| | |  || || ||||||||||| |||||||||||||| |||     
T  9082732 tatgttattaaatagtagtggtaattcttgtcttttaaaaagaaaaataa-taaaatgtatattttcagggtaaaatttaatcttttataaaagttatta 9082830  T
Q  192 attttaattaagttttatatg 212  Q
    ||| | |||| ||||||||||    
T  9082831 attctcattatgttttatatg 9082851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 16475322 - 16475381
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaata 150  Q
    |||||||||||||||| ||||| |||||||||| |||||||||  ||||||| |||||||    
T  16475322 tatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 8884 - 9005
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    |||||||||||||||| ||| |||||||||||| |||||||||  ||||||| ||||||||    | |||||||||||||||  ||||||||| ||| ||    
T  8884 tatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcacatggtaaaatttaaccttttataacagttat 8983  T
Q  191 tattttaattaagttttatatg 212  Q
    || ||||||||  |||||||||    
T  8984 tagtttaattatattttatatg 9005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 9537559 - 9537441
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattat 193  Q
    ||||||||||||||| ||| | |||||||||| |||| ||||||||||| ||||||||    ||| || ||||||||||  ||||||||||||| ||||     
T  9537559 atgttatgaattagaggtatagattcttgtctgttgagaagaaaaacaagtaaaatataaatttatattgtaaaatttaaccttttataaaagttattag 9537460  T
Q  194 tttaattaagttttatatg 212  Q
    ||||||||  |||||||||    
T  9537459 tttaattatattttatatg 9537441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 18474131 - 18474080
Alignment:
Q  100 tgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatat 151  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  18474131 tgaattagaagtacaaattcttgtcttttggaaagaaaaacaattaaaatat 18474080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 21264779 - 21264718
Alignment:
Q  110 gtagaaattcttgtcttttgaaaagaa--aaacaattaaaatatttcattacatggtaaaat 169  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||  ||||||||||||||    
T  21264779 gtagcaattcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaat 21264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 35762258 - 35762164
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaa 185  Q
    |||||||||||||||| ||||| |||||||| | |||||||||  ||||||| ||||||||    ||| |||||||||||||  |||||||||||    
T  35762258 tatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaaatatgaatttatatggtaaaatttaaccttttataaaa 35762164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 8421619 - 8421672
Alignment:
Q  95 tgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaa 148  Q
    |||||| || ||||||||| |||||||||||||| |||||||||| ||||||||    
T  8421619 tgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 8421672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 37667356 - 37667296
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatat 151  Q
    |||||||||||||||| ||||| |||||||||| |||||||||  ||||||| ||||||||    
T  37667356 tatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 37667296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 6836013 - 6836058
Alignment:
Q  110 gtagaaattcttgtcttttgaaaaga--aaaacaattaaaatattt 153  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||    
T  6836013 gtagcaattcttgtcttttgaaaagaagaaaacaattaaaatattt 6836058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 9993357 - 9993454
Alignment:
Q  115 aattcttgtcttttgaaaagaa--aaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 212  Q
    ||||||||||||||||||||||  |||||||||||||||||  ||| |||||||||| || | |||||||| ||||||  |||||||| |||||||||||    
T  9993357 aattcttgtcttttgaaaagaagaaaacaattaaaatatttatttatatggtaaaatctaatattttataagagtgat--ttttaattgagttttatatg 9993454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 15874143 - 15874022
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaaga--aaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgat 190  Q
    |||||||||||||||| ||||| |||||||| | |||||||||  ||||||| ||||||||    | | |||||||||||||  ||||||||||||| ||    
T  15874143 tatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttat 15874044  T
Q  191 tattttaattaagttttatatg 212  Q
    || ||||||||  |||||||||    
T  15874043 tagtttaattatattttatatg 15874022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 48654433 - 48654376
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatat 151  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||||    
T  48654433 atgttgtgaattagaagtacaaattcttgtcttttggaaagaaaaacaactaaaatat 48654376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 22077678 - 22077796
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattat 193  Q
    ||||||||||||||| ||||| |||||||||| || | ||||||||||| ||||||||    ||| |||||||||||||  | |||  |||||| ||||     
T  22077678 atgttatgaattagaggtagagattcttgtctgttaagaagaaaaacaactaaaatataaatttatatggtaaaatttaaccatttcaaaaagttattag 22077777  T
Q  194 tttaattaagttttatatg 212  Q
    ||||||||  |||||||||    
T  22077778 tttaattatattttatatg 22077796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 21491703 - 21491581
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaa----aaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtga 189  Q
    ||||||||||||||| ||||| |||||||||  ||||||||||    ||| || ||||||||    ||| |||||||||||||  ||||||||||||| |    
T  21491703 atgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagtta 21491604  T
Q  190 ttattttaattaagttttatatg 212  Q
    ||| ||||||||  |||||||||    
T  21491603 ttagtttaattatattttatatg 21491581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 11036485 - 11036406
Alignment:
Q  136 aaaacaattaaaatatt---tcattacatggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 212  Q
    |||||||||||||||||   |  |||||||||||||| || | |||||||| | |||||||||||||| |||||||||||    
T  11036485 aaaacaattaaaatattatttatttacatggtaaaatctaatattttataagaatgattattttaattgagttttatatg 11036406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 49170481 - 49170428
Alignment:
Q  95 tgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaa 148  Q
    |||||| || ||||||||| |||||||||||||| |||||||||| ||||||||    
T  49170481 tgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 49170428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 12196772 - 12196655
Alignment:
Q  93 tatgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgatta 192  Q
    |||||||| || |||  |||| |||||||||||||| |||||||||| ||||||||| | |  ||||  ||| ||| ||| |||||| |||| |||| ||    
T  12196772 tatgttattaaatagtggtagcaattcttgtcttttaaaaagaaaaataattaaaatgtatttttac--ggtgaaaattaatcttttctaaatgtgaata 12196675  T
Q  193 ttttaattaagttttatatg 212  Q
    ||||||| | ||||||||||    
T  12196674 ttttaataatgttttatatg 12196655  T

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Target: scaffold1838 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 221 - 339
Alignment:
Q  94 atgttatgaattagaagtagaaattcttgtcttttgaaaagaaaaacaattaaaatatttcattacatggtaaaatttattcttttataaaagtgattat 193  Q
    |||||||||||||||  |||| |||||||| | || |||||||||| |||||||||||     || |||||||||||||  ||||||||||||| ||||     
T  221 atgttatgaattagagatagagattcttgtttgttaaaaagaaaaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttattag 320  T
Q  194 tttaattaagttttatatg 212  Q
    ||||||||  |||||||||    
T  321 tttaattatattttatatg 339  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 243208 - 243168
Alignment:
Q  115 aattcttgtcttttgaaaaga--aaaacaattaaaatattt 153  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  243208 aattcttgtcttttgaaaagaagaaaacaattaaaatattt 243168  T

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Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 243155 - 243119
Alignment:
Q  176 ttttataaaagtgattattttaattaagttttatatg 212  Q
    |||||||| |||||||||||||||| |||||||||||    
T  243155 ttttataagagtgattattttaattgagttttatatg 243119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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