View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2127_high_1 (Length: 465)

Name: NF2127_high_1
Description: NF2127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2127_high_1
NF2127_high_1
[»] chr1 (8 HSPs)
chr1 (12-447)||(51455407-51455841)
chr1 (16-130)||(30206808-30206922)
chr1 (19-130)||(51480424-51480535)
chr1 (16-100)||(51497310-51497394)
chr1 (313-402)||(51479949-51480038)
chr1 (311-418)||(30207301-30207408)
chr1 (312-396)||(51496994-51497078)
chr1 (169-287)||(51480269-51480387)
[»] chr5 (4 HSPs)
chr5 (12-421)||(43160358-43160774)
chr5 (12-95)||(27396465-27396548)
chr5 (19-98)||(20868672-20868751)
chr5 (323-412)||(27395958-27396047)
[»] scaffold0020 (1 HSPs)
scaffold0020 (19-97)||(137353-137431)
[»] chr6 (2 HSPs)
chr6 (19-100)||(18085553-18085634)
chr6 (319-402)||(18079591-18079673)


Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Complemental strand, 51455841 - 51455407
Alignment:
Q  12 acagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  51455841 acagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttgtcactacaaaaagtgtgaagtcaacaa 51455742  T
Q  112 ctatatagcattagaataagtnnnnnnnngcattgattaatataccaaatcagtccttaccagaacacacgctcatctttagaataatccgccggtttta 211  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51455741 ctatatagcattagaataagtaaaaaaa-gcattgattaatataccaaatcagtctttaccagaacacacgctcatctttagaataatccgccggtttta 51455643  T
Q  212 tatttagctttgagagtgagagccctgtaattcacatcccaaaatcaaattataaaatgaaaaatatatgaaactacaaattttctccgactatacagga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51455642 tatttagctttgagagtgagagccctgtaattcacatcccaaaatcaaattataaaatgaaaaatatataaaactacaaattttctccgactatacagga 51455543  T
Q  312 atacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatactcagagaact 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51455542 atacctcgtctcttggcttctctttccttctcaatcatttgttctgcatccaaccgtcttaaatgtggaagaagtcctttcagcagatacttagagaact 51455443  T
Q  412 caacctcctcctcgttgatggtttcagccttacgct 447  Q
    ||||||||||||||||||||||||||||||||||||    
T  51455442 caacctcctcctcgttgatggtttcagccttacgct 51455407  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 30206808 - 30206922
Alignment:
Q  16 aggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagctat 115  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||  | ||||    
T  30206808 aggagacaaatgtcaaaagagcattttgtacagcttctgtggtagtcaaatattgacgttttgcagttgtcactacaaaaagtgttaagtcattaactat 30206907  T
Q  116 atagcattagaataa 130  Q
    |||| ||||| ||||    
T  30206908 atagaattagtataa 30206922  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 51480535 - 51480424
Alignment:
Q  19 agacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagctatata 118  Q
    ||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||  ||| |||||    
T  51480535 agacaaatgttaaaagagcattctgtacagcttctgtggtagtcaaatattgatgttttgcagttgtcactacaaaaagtgttaaatcattagcaatata 51480436  T
Q  119 gcattagaataa 130  Q
    | || |||||||    
T  51480435 gaatcagaataa 51480424  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 51497394 - 51497310
Alignment:
Q  16 aggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgt 100  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||| | |||||||| |||||||    
T  51497394 aggagacaaatgtcaaaagaacattttgtacagcttctgtggtagtcgaatattgaggttttgcagatgtcactacagaaagtgt 51497310  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 402
Target Start/End: Complemental strand, 51480038 - 51479949
Alignment:
Q  313 tacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatact 402  Q
    ||||| ||||||| |||||| | |||||||| | |||||||||||||||||| |||||||||| |||||||||| |||||| || |||||    
T  51480038 taccttgtctctttgcttctatctccttctcgaccatttgttcttcatccaatcgtcttaaatatggaagaagttctttcaccatatact 51479949  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 418
Target Start/End: Original strand, 30207301 - 30207408
Alignment:
Q  311 aatacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatactcagagaac 410  Q
    ||||||| ||||||| |||||| | ||||||||   ||||||||||||||||||  |||||||||  |||||||||  ||||| || |||||  |||| |    
T  30207301 aataccttgtctctttgcttctatctccttctcggccatttgttcttcatccaattgtcttaaatacggaagaagtattttcaacatatacttggagagc 30207400  T
Q  411 tcaacctc 418  Q
    ||||||||    
T  30207401 tcaacctc 30207408  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 396
Target Start/End: Complemental strand, 51497078 - 51496994
Alignment:
Q  312 atacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagca 396  Q
    |||||| || |||| |||||| | |||||||||  |||||| ||||||||||| || ||||||| ||||| |||| |||||||||    
T  51497078 ataccttgtatctttgcttctatctccttctcagccatttgctcttcatccaaacgacttaaatatggaaaaagtactttcagca 51496994  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 287
Target Start/End: Complemental strand, 51480387 - 51480269
Alignment:
Q  169 taccagaacacacgctcatctttagaataatccgccggttttatatttagctttgagagtgagagccctgtaattcacatcccaaaatcaaattataaaa 268  Q
    |||||| ||||||||| || |||||  ||||| ||   |||||  |||||||| ||  |||||||||||| |||   | |||||||| |||||||||||     
T  51480387 taccagtacacacgcttatttttagggtaatctgcgacttttacttttagcttagaatgtgagagccctgcaatgttcgtcccaaaagcaaattataaat 51480288  T
Q  269 tgaaaaatatatgaaacta 287  Q
    || ||||||||||||||||    
T  51480287 tggaaaatatatgaaacta 51480269  T

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Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 421
Target Start/End: Complemental strand, 43160774 - 43160358
Alignment:
Q  12 acagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacag 111  Q
    ||||||||||||||||| ||||| ||||||||  ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||     
T  43160774 acagaggagacaaaggttaaaagggcattttgtgcagcttctgcggtagtcaaatattgatgttttgcagttgtcactataaaaagtgtgaagccaacat 43160675  T
Q  112 -----ctatatagcattagaataagtnnnnnnnngcattgattaatataccaaatcagtccttaccagaacacacgctcatctttagaataatccgccgg 206  Q
         ||||| ||||||||| |||||         |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43160674 tgtcactataaagcattaga-taagtaaagaaaa-cattgattaatataccaaatcagtccttaccagaacacacgcgcatctttagaataatccgccgg 43160577  T
Q  207 ttttatatttagctttgagagtgagagc----cctgtaattcacatcccaaaatcaaattataaaatgaaaaatatatgaaactacaaattttctccgac 302  Q
    ||||||||||||| |||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  |||| |||    
T  43160576 ttttatatttagcattgagagtgagagagaggcctgtaattcacatcccaaaatcaaattataaaatgaaaaatatataaaactaaaaatgatctctgac 43160477  T
Q  303 tatacaggaatacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatact 402  Q
    |||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||    
T  43160476 tataaaggaataccttgtatcttggcttctctttccttctaaatcatttgttcttcatccaaccctcttaaatgtggaagaagtcctttcagaatattct 43160377  T
Q  403 cagagaactcaacctcctc 421  Q
      ||||||||||| |||||    
T  43160376 tcgagaactcaacttcctc 43160358  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 27396548 - 27396465
Alignment:
Q  12 acagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaa 95  Q
    ||||||||||||||||||||| || |||| ||  |||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  27396548 acagaggagacaaaggtcaaaggaacattctgtgcagcttctgtggtaatcaaatattgatgttttgcagttgtcgctacaaaa 27396465  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 20868672 - 20868751
Alignment:
Q  19 agacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagt 98  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||||||| ||  | | |||||| ||||||||||||||    
T  20868672 agacaaaggtcaaaagagcattttgcacaacttcggtggtagtcaaatatcgagctctggcagttgtcactacaaaaagt 20868751  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 27396047 - 27395958
Alignment:
Q  323 cttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatactcagagaactc 412  Q
    |||||||||| | ||||||||   ||||||||||| |||||| ||| ||||||||||||||||  |||| |||| |||||  ||||||||    
T  27396047 cttggcttctatctccttctcggccatttgttcttgatccaatcgtattaaatgtggaagaagagctttgagcatatacttggagaactc 27395958  T

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Target: scaffold0020 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 137353 - 137431
Alignment:
Q  19 agacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaag 97  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |  ||| |||||| |||||||||||||    
T  137353 agacaaaggtcaaaagagcattttgtacagcttctgtggtagtcaaatattaagctttggcagttgtcactacaaaaag 137431  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 18085634 - 18085553
Alignment:
Q  19 agacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgt 100  Q
    ||||||| || ||||||||||| |  |||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  18085634 agacaaatgttaaaagagcattctttacagctcctgtggtagtcgaatattgatgttttgcagttgtcactacaaaaagtgt 18085553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 18079673 - 18079591
Alignment:
Q  319 gtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatact 402  Q
    ||||||| ||| || | |||||||| | |||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||    
T  18079673 gtctctttgctgctatatccttctcgaccatttgttcttcatccaatcgtcttaaatatggaagaagt-ctttcagcatatact 18079591  T

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