View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2127_high_4 (Length: 306)
Name: NF2127_high_4
Description: NF2127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2127_high_4 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 39559517 - 39559220
Alignment:
| Q |
1 |
atgaatgataagagtttgaagtttggggaaatattgaaattgttccatcagccagttccacttgaacgaggcgagttcgcagaagtctaatataagctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559517 |
atgaatgataagagtttgaagtttggggaaatattgaaattgttccatcagccagttccacttgaacgaggcgagttcgcagaagtctaatataagctcc |
39559418 |
T |
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| Q |
101 |
agatgggttaaattgtgaaacatgccatgtaaataacagggggaggtctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559417 |
agatgggttaaattgtgaaacatgccatgtaaataacagggggaggtctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaac |
39559318 |
T |
|
| Q |
201 |
ctttggaaatgttagctctgaccagattggataggtttagaacctctctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgct |
298 |
Q |
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| T |
39559317 |
ctttggaaatgttagctctgaccaaattggataggtttagaacctctctagctgtacgaataaccttacaaagtgccgtaaggattacatcctttgct |
39559220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 298
Target Start/End: Complemental strand, 50814979 - 50814829
Alignment:
| Q |
148 |
ctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctct |
247 |
Q |
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|||| ||||||||||| | ||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50814979 |
ctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaacctct |
50814880 |
T |
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| Q |
248 |
ctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgct |
298 |
Q |
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| T |
50814879 |
ctacctgtacgaatcaccatacaacgtctcgtaactattacatcctttgct |
50814829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 298
Target Start/End: Original strand, 50860885 - 50861035
Alignment:
| Q |
148 |
ctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctct |
247 |
Q |
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|||| ||||||||||| | ||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50860885 |
ctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaacctct |
50860984 |
T |
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| Q |
248 |
ctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgct |
298 |
Q |
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|||||||||||||||||| ||||| || ||||| ||||||||||||||| |
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| T |
50860985 |
ctacctgtacgaatcaccatacaacgtctcgtaactattacatcctttgct |
50861035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 49868244 - 49868308
Alignment:
| Q |
1 |
atgaatgataagagtttgaagtttggggaaatattgaaattgttccatcagccagttccacttga |
65 |
Q |
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|||||||||||||||||||||||| ||||||| || || |||| ||||||||||||||||||| |
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| T |
49868244 |
atgaatgataagagtttgaagtttagggaaattttcaagcagttcaatcagccagttccacttga |
49868308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 49856951 - 49856999
Alignment:
| Q |
83 |
aagtctaatataagctccagatgggttaaattgtgaaacatgccatgta |
131 |
Q |
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||||| ||| |||||||||| ||||||||||||||||||| || ||||| |
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| T |
49856951 |
aagtccaatctaagctccaggtgggttaaattgtgaaacacgctatgta |
49856999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 2380 - 2408
Alignment:
| Q |
4 |
aatgataagagtttgaagtttggggaaat |
32 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2380 |
aatgataagagtttgaagtttggggaaat |
2408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 3926 - 3954
Alignment:
| Q |
4 |
aatgataagagtttgaagtttggggaaat |
32 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3926 |
aatgataagagtttgaagtttggggaaat |
3954 |
T |
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