View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2127_low_7 (Length: 249)
Name: NF2127_low_7
Description: NF2127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2127_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 39983823 - 39983629
Alignment:
| Q |
18 |
tggatgcctgtgaatgcataaacagtgaatgaaggtatagaaatcagataaatgtgaagtaaaaatagaaaaacggatgtagctcaagcttatatgattc |
117 |
Q |
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| T |
39983823 |
tggatgcctgtgaatgcataaacaatgaatgaaggtatagaaatcagataaatgtgaagta------------------tagctcaagcttatatgatgc |
39983742 |
T |
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| Q |
118 |
tctaattagatgccacatttaatttattatagaatgtttcttcaaaataaatccataccattcaagtggagaaacagcagcacaattgacaagcatgtac |
217 |
Q |
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| T |
39983741 |
tctaattagatgccacatttaatttattatagaatgtttcttcaaaataaatccataccattcaagtggagaaacagcagcacaattgacaagcatgtac |
39983642 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 44916148 - 44916093
Alignment:
| Q |
173 |
taccattcaagtggagaaacagcagcacaattgacaagcatgtactgtccactctt |
228 |
Q |
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| T |
44916148 |
taccattcaaatggagagacagcagcacaatttacaaacatgtattgtccactctt |
44916093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 44899925 - 44899870
Alignment:
| Q |
173 |
taccattcaagtggagaaacagcagcacaattgacaagcatgtactgtccactctt |
228 |
Q |
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| T |
44899925 |
taccattcaaatggagagacagcagcacaatttacaaacatgtattgtccgctctt |
44899870 |
T |
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