View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_high_1 (Length: 822)
Name: NF21280_high_1
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 346 - 727
Target Start/End: Complemental strand, 37534552 - 37534174
Alignment:
| Q |
346 |
tgtatctctcatgttaccaaaatgataattgttctcttataaggtaatagtagtaactagataggatnnnnnnnnnttcatttgagttgatctggtggtc |
445 |
Q |
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| T |
37534552 |
tgtatctctcgtgttaccaacatgataattgttctcttataaggtaatagtagtaactagataggataaaaaaaa-ttcacttaagttgatctggta--- |
37534457 |
T |
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| Q |
446 |
ctggtttgggatatgagagtatgctatttttcaaagtcttaaattcga-ttcctctaatgtcaatttatgtgaactaatttaacttcttattaaatggtt |
544 |
Q |
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| T |
37534456 |
ctggtttgagatatgagagtatactacttctcaaaatcttaaattcaacttcctctaatatcaatttatgtgagctaatttaacttcttattaaatggtt |
37534357 |
T |
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| Q |
545 |
tacttgaagagtcttgtgctctctatcatttcatactcgtaatacacattttaacattatctgttgtgagtatttattgcaaatatttaatcgatatgag |
644 |
Q |
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| T |
37534356 |
tacttcaagagtcttgtgctctctatcatt-catactcataatacacattttaacactatctgttgtgagtatttattgcaaatatttaatcgatatgag |
37534258 |
T |
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| Q |
645 |
tccta-tttgtcatccaaaaaactactactacatcgatccaagttatcacaagaaaatgatcattgtgatttgtgatactacta |
727 |
Q |
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| T |
37534257 |
tcctattttgtcatccaaaaaactactactacatccatccaagttatcacaagaaaatgatcactgtgatttgtgatactacta |
37534174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 37534885 - 37534677
Alignment:
| Q |
18 |
ggcacaatggcataagtctagaacagttcaaatattagctataaataaattaataaactgaagtggaagattaattattagccttaaaacatttattcat |
117 |
Q |
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| T |
37534885 |
ggcacaatggcataagtctagaacagttcaaaaattagctataaataaattaataaactgaagtggaagattaattattagccttaaaacatttattcat |
37534786 |
T |
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| Q |
118 |
aaatggaggggaaataccccctaaaaaatggaggggaaataatctaatttcccttatttaaaataaaataaatttagtgtgagaggatgttgtctcaata |
217 |
Q |
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| T |
37534785 |
aaattgaggggaaataccccctaaaaaatggaggggaaataatctaattttccttatttaaaataaaataaatttagtgttagaggatgctgtctcaata |
37534686 |
T |
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| Q |
218 |
caatattag |
226 |
Q |
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| T |
37534685 |
caatattag |
37534677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 770 - 822
Target Start/End: Original strand, 37533656 - 37533708
Alignment:
| Q |
770 |
aaacgaccatggctataatagaaaaggaagaatgagagagacctcacagttaa |
822 |
Q |
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| T |
37533656 |
aaacgaccatggctataatagaaaaggaagaatgagagagacctcacagttaa |
37533708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 734 - 774
Target Start/End: Complemental strand, 37534135 - 37534095
Alignment:
| Q |
734 |
tggagtagtggtccacaatcaaaatgaagtccccttaaacg |
774 |
Q |
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| T |
37534135 |
tggagtagtggtccacaatcaaaatgaagtccccttaaacg |
37534095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 37534639 - 37534598
Alignment:
| Q |
264 |
tttacatttacttatcttggattttctcgtattaagctagat |
305 |
Q |
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| T |
37534639 |
tttacatttacttatctcggattttctcgtattaagctagat |
37534598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 14660004 - 14660044
Alignment:
| Q |
494 |
ttcctctaatgtcaatttatgtgaactaatttaacttctta |
534 |
Q |
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| T |
14660004 |
ttcctctaatgtcaatttaagtggactaatttaacttctta |
14660044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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