View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21280_high_20 (Length: 379)
Name: NF21280_high_20
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 95 - 364
Target Start/End: Original strand, 34395394 - 34395663
Alignment:
| Q |
95 |
ctcgagtgcacatttgagactttttgaagaaaaaataaatgaatgaggcacaaatgaagagactatttgaagggttatgtggtgttctagaatttgaact |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34395394 |
ctcgagtgcacatttgagactttttgaagaaaaaataaatgaatgaggcacaaatgaagagactatttgaagggttatgtggtgttctagaatttgaact |
34395493 |
T |
|
| Q |
195 |
ctttacgtctatgcttggtttatttaaaaaatgataaatatatgctgaactgcatttcttctgctattttgatggatctttgcttgtaaacttcaaatta |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34395494 |
ctttacgtctatgcttggtttatttaaaaaatgataaatatatgctgaaatgcatttcttctgctattttgatggatctttgcttgtaaacttcaaatta |
34395593 |
T |
|
| Q |
295 |
gagaatgtatgtgttgatgcttatgggattcgtagaaaatccgatatgcatgttgaagacataactttgt |
364 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34395594 |
gaaaatgtatgtgttgatgcttatgggattcatagaaaatccgatatgcatgttgcagacataactttgt |
34395663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University