View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_high_21 (Length: 378)
Name: NF21280_high_21
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 55950242 - 55950609
Alignment:
| Q |
11 |
cataggcatgtaagagagacgcataagttgctcgattcggcaaaatgtcattatttatcatctctttatatatagtcctggcctgccatggcctcttagc |
110 |
Q |
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| T |
55950242 |
cataggcatgtaagagagacgcataagttgctcgattcggcaaaatgtcattatttatcatctctttatatatagtcctggcctgccatggcctcttagc |
55950341 |
T |
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| Q |
111 |
tctacccatggcatccaaaagagtgttataaacaaccaagttaggcttaacaccaagagccttcatttcctcataaacattcaagcatccatcataattc |
210 |
Q |
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| T |
55950342 |
tctacccatggcatccaaaagagtgttataaacaaccaagttaggcttaacaccaagagccttcatttcctcataaacattcaagcatccatcataattc |
55950441 |
T |
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| Q |
211 |
cctgccaccccatacatcttaatcaacgtagagaacgtcgcaggctcaatacgccatttctcagtcctagcacgatcatacaagttcaaagccatatcaa |
310 |
Q |
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| T |
55950442 |
cctgccaccccatacatcttaatcaacgtagagaacgtcgcaggctcaatacgccatttctcagtcctagcacgatcatacaagttcaaagccatatcaa |
55950541 |
T |
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| Q |
311 |
tatccccagcctttccataagagtcaatcataaccgaatatgtaacatcatcaggttcacatccaaac |
378 |
Q |
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| T |
55950542 |
tatccccagcctttccataagagtcaatcataaccgaatatgtaacatcatccggttcacatccaaac |
55950609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 310
Target Start/End: Original strand, 9663754 - 9663962
Alignment:
| Q |
102 |
cctcttagctctacccatggcatccaaaagagtgttataaacaaccaagttaggcttaacaccaagagccttcatttcctcataaacattcaagcatcca |
201 |
Q |
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| T |
9663754 |
cctcttagctctccccatagcatacaacaaagcattatacaaaaccatattcggcctaacaccaagaactttcatatcattataaacactcaaacaccca |
9663853 |
T |
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| Q |
202 |
tcataattccctgccaccccatacatcttaatcaacgtagagaacgtcgcaggctcaatacgccatttctcagtcctagcacgatcatacaagttcaaag |
301 |
Q |
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| T |
9663854 |
tcataattccccaatatcccatacatcttaatcaaagccgaaaacgcaactggcctaataacccatttctcatttttcgcactatcatacaatttcaaag |
9663953 |
T |
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| Q |
302 |
ccatatcaa |
310 |
Q |
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| T |
9663954 |
ccatatcaa |
9663962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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