View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21280_high_24 (Length: 333)
Name: NF21280_high_24
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 52471626 - 52471323
Alignment:
| Q |
13 |
atactcttagaaggattaatatgagtaaagttttaaggagaaacatgtttgagagcatctacaaaataatgccgaatttggtggacttaccgatctcccc |
112 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52471626 |
atactcttagaagaactaatatgagtaaagttttaaggagaaacatgtttgagagcatctacaaaataatgccgaatttggtggacttaccgatctcccc |
52471527 |
T |
|
| Q |
113 |
tctaagttcaaaatcaaaacataataatataatcctcaaaatggaaaacattctgttactacttttactaacnnnnnnncccaactaagtgatgatcatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52471526 |
tctaagttcaaaatcaaaacataataatataatcctcaaaatggaaaacagtctgttactacttttactaactttttttcccaactaagtgatgatcatc |
52471427 |
T |
|
| Q |
213 |
aaattcaatgacatcgtgcaaaatggcctagaaatgtaaaatacaaatacaatcattatatgtggtgagaaaagaaaaacataagagtattataaaggag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52471426 |
aaattcaatgacatcgtgcaaaatggcctagaaatgtaaaatacaaatacaatcattatatgcggtgagaaaagaaaaacataagagtattataaaggag |
52471327 |
T |
|
| Q |
313 |
aaac |
316 |
Q |
| |
|
|||| |
|
|
| T |
52471326 |
aaac |
52471323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University