View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21280_high_29 (Length: 262)

Name: NF21280_high_29
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21280_high_29
NF21280_high_29
[»] chr4 (16 HSPs)
chr4 (135-247)||(55505068-55505180)
chr4 (88-237)||(53761685-53761834)
chr4 (1-73)||(21834204-21834276)
chr4 (156-227)||(532236-532307)
chr4 (25-238)||(1600455-1600671)
chr4 (17-225)||(55908567-55908778)
chr4 (176-245)||(12121458-12121527)
chr4 (16-71)||(547119-547174)
chr4 (5-71)||(570737-570806)
chr4 (16-75)||(3438404-3438463)
chr4 (5-71)||(570551-570617)
chr4 (175-245)||(1513407-1513477)
chr4 (176-233)||(1519143-1519200)
chr4 (174-227)||(1537766-1537819)
chr4 (5-74)||(12121284-12121353)
chr4 (175-227)||(1489361-1489413)
[»] chr1 (4 HSPs)
chr1 (1-247)||(19468325-19468571)
chr1 (146-247)||(43634934-43635033)
chr1 (6-247)||(9586666-9586907)
chr1 (24-227)||(9581118-9581321)
[»] chr3 (4 HSPs)
chr3 (6-231)||(13470563-13470788)
chr3 (5-233)||(51764270-51764498)
chr3 (5-245)||(51113611-51113851)
chr3 (1-74)||(514551-514624)
[»] chr6 (20 HSPs)
chr6 (1-227)||(6589149-6589375)
chr6 (7-247)||(6394891-6395131)
chr6 (37-245)||(7119186-7119394)
chr6 (37-245)||(7131664-7131872)
chr6 (1-233)||(10579562-10579794)
chr6 (1-219)||(6426566-6426784)
chr6 (6-231)||(6416009-6416234)
chr6 (1-245)||(6402889-6403133)
chr6 (154-238)||(19632475-19632559)
chr6 (9-247)||(6410033-6410271)
chr6 (7-73)||(6423418-6423484)
chr6 (1-247)||(6432188-6432434)
chr6 (121-231)||(7994128-7994238)
chr6 (1-71)||(14820893-14820963)
chr6 (33-74)||(9411555-9411596)
chr6 (154-245)||(6585216-6585307)
chr6 (16-74)||(6594447-6594505)
chr6 (174-247)||(14820720-14820793)
chr6 (193-245)||(6596946-6596998)
chr6 (7-71)||(8913817-8913881)
[»] chr8 (5 HSPs)
chr8 (1-92)||(32151483-32151574)
chr8 (1-238)||(18315096-18315336)
chr8 (16-71)||(17627897-17627952)
chr8 (1-71)||(17636220-17636290)
chr8 (202-247)||(27922535-27922580)
[»] chr7 (1 HSPs)
chr7 (7-231)||(10614636-10614860)
[»] chr5 (4 HSPs)
chr5 (24-247)||(41889400-41889626)
chr5 (31-74)||(41901391-41901434)
chr5 (193-233)||(20478100-20478140)
chr5 (202-247)||(41901562-41901607)
[»] scaffold0807 (1 HSPs)
scaffold0807 (106-238)||(1395-1527)
[»] chr2 (1 HSPs)
chr2 (17-225)||(1037503-1037714)
[»] scaffold0295 (1 HSPs)
scaffold0295 (137-226)||(586-675)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 55505068 - 55505180
Alignment:
Q  135 gaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttgac 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55505068 gaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgac 55505167  T
Q  235 gatggaacacttt 247  Q
    |||||||||||||    
T  55505168 gatggaacacttt 55505180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 53761685 - 53761834
Alignment:
Q  88 atatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaacttta 187  Q
    ||||| |||||| || | ||||||||||  || |||||||| |||||| |||||||| ||||| | ||||||| |||||| ||||||||||||||||||     
T  53761685 atatctaaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttg 53761784  T
Q  188 gagtcccccagctagaggtgttgaacttgtcatatacaaaggttgacgat 237  Q
     ||| ||| ||||||||| |||||||||||||| ||| || ||| |||||    
T  53761785 tagttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgat 53761834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21834204 - 21834276
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttga 73  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||    
T  21834204 aattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacagctgcttgatttga 21834276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 532307 - 532236
Alignment:
Q  156 ttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaa 227  Q
    ||||| |||||| ||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  532307 ttcaagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaa 532236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 1600671 - 1600455
Alignment:
Q  25 atcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatc-gaa--aggtgttggccaagttttaaaaagtt 121  Q
    ||||| ||||||||||||| ||| || |||||||| |||||||||||||| ||||||   |||||||| |||  |||| || | ||||||||||  || |    
T  1600671 atcataatgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagat 1600572  T
Q  122 gttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcata 221  Q
     || ||| |||||  |||||||| ||||| | ||||||| | |||| ||    ||||||||||||  ||| |   | || ||||||||||||||||||||    
T  1600571 tttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcata 1600472  T
Q  222 tacaaaggttgacgatg 238  Q
    ||||| |||||||||||    
T  1600471 tacaagggttgacgatg 1600455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 55908567 - 55908778
Alignment:
Q  17 atgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatc-gaa--aggtgttggccaagtttt 113  Q
    |||||| ||||||  ||||||||||||||||||| ||||||||  | |||||||||||    ||||| |||||||| |||  |||| || |  ||||| |    
T  55908567 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 55908666  T
Q  114 aaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaac 213  Q
    ||  || ||||||||| ||||  |||||||  ||||||||||||||| |||||| ||| || |||| ||||||| ||| ||  |  |||||||||| |||    
T  55908667 aaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaac 55908766  T
Q  214 ttgtcatataca 225  Q
    |||||| |||||    
T  55908767 ttgtcacataca 55908778  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 12121458 - 12121527
Alignment:
Q  176 gaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttgacgatggaacact 245  Q
    |||||||||||  ||| ||| | ||||| ||||||||||||||||||||||| ||||| |||| ||||||    
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 12121527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 547174 - 547119
Alignment:
Q  16 gatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgattt 71  Q
    |||||||||||||  |||||| ||||||| ||||| |||||||| |||||||||||    
T  547174 gatgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgattt 547119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 570806 - 570737
Alignment:
Q  5 catggttaaatgatgaaagcatcattat---gtttgcttccattttccctaatttgcagctgcttgattt 71  Q
    ||||||||| |||||||| ||| |||||   |||||||||||||||||| |||||||| || ||||||||    
T  570806 catggttaagtgatgaaaacattattataatgtttgcttccattttccccaatttgcaactacttgattt 570737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 3438404 - 3438463
Alignment:
Q  16 gatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgaga 75  Q
    ||||||||| || | |||||| |||| |||||||| |||||||||||||||||| |||||    
T  3438404 gatgaaagcctcttgatgttttcttctattttccccaatttgcagctgcttgatgtgaga 3438463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 570617 - 570551
Alignment:
Q  5 catggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgattt 71  Q
    ||||||||| |||||||| |||  | ||||||||||| |||||||| ||||||||| | ||||||||    
T  570617 catggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgattt 570551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 1513407 - 1513477
Alignment:
Q  175 ggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttgacgatggaacact 245  Q
    ||||||||||||  ||| ||| | ||||| |||||||||||||||| |||||| ||||| |||| ||||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacact 1513477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 1519143 - 1519200
Alignment:
Q  176 gaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttga 233  Q
    |||||||||||  ||| ||| | ||||||||||||||||||||| |||||| ||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttga 1519200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 1537766 - 1537819
Alignment:
Q  174 tggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaa 227  Q
    |||||||||||||  ||| ||| | ||||| |||||||||||||||||||||||    
T  1537766 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaa 1537819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 12121284 - 12121353
Alignment:
Q  5 catggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgag 74  Q
    |||||||| | |||||||||||||  | | |||||||| ||||||| ||||||||  |||||||||||||    
T  12121284 catggttacaagatgaaagcatcaaaaggattgcttccgttttccccaatttgcaattgcttgatttgag 12121353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 1489361 - 1489413
Alignment:
Q  175 ggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaa 227  Q
    ||||||||||||  ||| ||| | ||||| |||||||||||||||||||||||    
T  1489361 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaa 1489413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 19468325 - 19468571
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtg 100  Q
    |||||||||||||  ||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||     ||| |  |||||||| ||||      
T  19468325 aattcatggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatcggaaggca 19468424  T
Q  101 ttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagct 200  Q
    || | ||||||||||  || |||| ||| |||||| |||| ||| ||||| ||||||||| |||||| ||| ||||| ||||||||  ||| ||| ||||    
T  19468425 tttgtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagct 19468524  T
Q  201 agaggtgttgaacttgtcatatacaaaggttgacgatggaacacttt 247  Q
     ||||||||||| |||||| ||||||||||||| |||| ||||||||    
T  19468525 ggaggtgttgaagttgtcagatacaaaggttgatgatgaaacacttt 19468571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 43635033 - 43634934
Alignment:
Q  146 tagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttgacgatggaacact 245  Q
    ||||||||||||||| |||||||  | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43635033 tagcctactgttcaatagtgaac--acttggaatgacctttagagtcccccagctagaggcgttgaacttgtcatatacaaaggttgacgatggaacact 43634936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 9586907 - 9586666
Alignment:
Q  6 atggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaa---aggtgtt 102  Q
    ||||||||  ||| ||| |||||| ||||||||||| |||||||| |||||||||||||||||| || |   ||||   |||||||| ||   |||| ||    
T  9586907 atggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatt 9586808  T
Q  103 ggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctag 202  Q
     | ||||||||| |||| |||||| |||||||  |||||||| ||   |  |||||  | || |||||| ||| ||| || |||  ||||||| ||||||    
T  9586807 tgtcaagttttacaaagatgttgtcagattagacatttgaacata---tcttgttctcctgtaaacctacttgaaattaattttgaagtccccaagctag 9586711  T
Q  203 aggtgttgaacttgtcatatacaaaggttgacgatggaacacttt 247  Q
    ||||||||||||||||||||||| | ||| | |||| ||||||||    
T  9586710 aggtgttgaacttgtcatatacagatgttaatgatgaaacacttt 9586666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 9581321 - 9581118
Alignment:
Q  24 catcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaa---aggtgttggccaagttttaaaaagt 120  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||| || |   ||||   |||||||| ||   |||| || | ||||||||||||||     
T  9581321 catcataatgtttgcttcaattttccccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtcaagttttaaaaaga 9581222  T
Q  121 tgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcat 220  Q
    |||||| |||||||  |||||||| ||   |  |||||  | || || ||| ||| ||| || |||  | ||||| ||||||||||||||||||||||||    
T  9581221 tgttgtcagattagacatttgaacata---tcttgttctcctgtaaaactacttgaaattaattttgaactccccaagctagaggtgttgaacttgtcat 9581125  T
Q  221 atacaaa 227  Q
     ||||||    
T  9581124 gtacaaa 9581118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 13470563 - 13470788
Alignment:
Q  6 atggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggc 105  Q
    |||||||| ||||||| ||||||| ||||||||||||| |||||| ||||||||||||||||||||||   ||||| |   | |||| |||||| || |     
T  13470563 atggttaagtgatgaaggcatcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatcaaaaggtatttgt 13470662  T
Q  106 caagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagagg 205  Q
    ||||||||||  |  ||||||||||||||| |||||||| ||||||| |||  || |||||| ||| ||||||||||||||   || ||| | || ||||    
T  13470663 caagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggagg 13470762  T
Q  206 tgttgaacttgtcatatacaaaggtt 231  Q
    |||||||||||||| |||||||||||    
T  13470763 tgttgaacttgtcaaatacaaaggtt 13470788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 51764270 - 51764498
Alignment:
Q  5 catggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttgg 104  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |    |||| |   |||||| ||||||||  |    
T  51764270 catggttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaaggtgtctg 51764369  T
Q  105 ccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagag 204  Q
      |||||||||  || |||| |||||||||| ||||||||||| || | ||||||| |||||| ||| ||||||||||||||  ||| ||  |||| |||    
T  51764370 tgaagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggag 51764469  T
Q  205 gtgttgaacttgtcatatacaaaggttga 233  Q
    |||||  ||||||||| |||||| |||||    
T  51764470 gtgttagacttgtcatttacaaaagttga 51764498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 51113611 - 51113851
Alignment:
Q  5 catggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttgg 104  Q
    |||||||||  ||||| |||||||| ||| |||||||||||||||| ||| ||||||| |||||||| |    |||| |  | |||||  ||||| || |    
T  51113611 catggttaagagatgagagcatcataatgattgcttccattttccccaatctgcagcttcttgatttaactcattgctatgagatatccgaaggtatttg 51113710  T
Q  105 ccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagag 204  Q
     ||||||||||| || |||||||| |||||| |||||||  |||| |||||||||| | |||| ||| ||||||||||||||  ||  ||| | || |||    
T  51113711 tcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaaactggag 51113810  T
Q  205 gtgttgaacttgtcatatacaaaggttgacgatggaacact 245  Q
    |||||  |||||||| |||||| |||||| |||| ||||||    
T  51113811 gtgttagacttgtcaaatacaatggttgatgatgaaacact 51113851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 514551 - 514624
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgag 74  Q
    |||||||| ||||  ||||||| | | || ||||||||||| |||||||| |||||||||||  ||||||||||    
T  514551 aattcatgcttaagagatgaaaaccttataatgtttgcttcaattttcccgaatttgcagctaattgatttgag 514624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6589149 - 6589375
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtg 100  Q
    ||||||||||||| ||||| ||  ||||| |||||||||||||||||||| |||||  || |||||||||| |    |||  | |||||||| ||||||     
T  6589149 aattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaaggta 6589248  T
Q  101 ttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagct 200  Q
    || | ||||| || | ||| ||||||||||||||| |||||||| |||||| ||||   | |||||| ||| ||||||||||||||  ||| |||  |||    
T  6589249 tttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgct 6589348  T
Q  201 agaggtgttgaacttgtcatatacaaa 227  Q
     |||||||||||||||||| |||||||    
T  6589349 ggaggtgttgaacttgtcaaatacaaa 6589375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 6395131 - 6394891
Alignment:
Q  7 tggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggcc 106  Q
    |||||||  |||||||  ||||| |||||| ||||||||||||| ||||| ||||| |||||||||| | |||||  | | |||||  ||||| || | |    
T  6395131 tggttaatagatgaaataatcataatgtttacttccattttccccaatttacagctacttgatttgacacgttgctcacaaatatctgaaggtatttgtc 6395032  T
Q  107 aagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggt 206  Q
    |||||||||| |  ||||||||| |||   |||||||| |||| | |||||||| |||||| |||  |||||||||||||  ||| ||| |||| |||||    
T  6395031 aagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggt 6394932  T
Q  207 gttgaacttgtcatatacaaaggttgacgatggaacacttt 247  Q
    ||||||||||||| ||||||  ||||| |||| ||| ||||    
T  6394931 gttgaacttgtcaaatacaagcgttgatgatgaaactcttt 6394891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 7119394 - 7119186
Alignment:
Q  37 gcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattagga 136  Q
    |||||| ||||||| ||||| || || ||||||||||  | |||| | ||||||||  ||||| || | ||||||||||  || |||| ||||||||       
T  7119394 gcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaac 7119295  T
Q  137 atttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttgacga 236  Q
    |||||||| ||||| ||||||||| |||||| ||| ||||||||||||||   || | |||||| |||||||||||||||||| |||| |||||||| ||    
T  7119294 atttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatacgaaggttgatga 7119195  T
Q  237 tggaacact 245  Q
    || ||||||    
T  7119194 tgaaacact 7119186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 7131872 - 7131664
Alignment:
Q  37 gcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattagga 136  Q
    |||||| ||||||| ||||| || || ||||||||||  | |||| | ||||||||  ||||| || | ||||||||||  || |||| ||||||||       
T  7131872 gcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaac 7131773  T
Q  137 atttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttgacga 236  Q
    |||||||| ||||| ||||||||| |||||| ||| ||||||||||||||   || | |||||| |||||||||||||||||| |||| |||||||| ||    
T  7131772 atttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatacgaaggttgatga 7131673  T
Q  237 tggaacact 245  Q
    || ||||||    
T  7131672 tgaaacact 7131664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 10579562 - 10579794
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtg 100  Q
    ||||||| ||||  ||||||||  || || ||||| |||||| ||||||| ||||||||||||||||||||||  | |||| || |||||||  |||||     
T  10579562 aattcattgttacgtgatgaaatgattataatgttagcttcctttttccccaatttgcagctgcttgatttgaatacttgcgaatacatatctgaaggta 10579661  T
Q  101 ttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagct 200  Q
    ||   ||||||| |  ||| ||| ||||||||| | |||||||| ||||| | ||| ||| |||||| | | || |||| ||  ||  | | ||||||||    
T  10579662 tttttcaagtttcaggaagatgtggtaagattaagcatttgaacttagccaaatgtccaagagtgaagcgacttagaataaagattgtaattccccagct 10579761  T
Q  201 agaggtgttgaacttgtcatatacaaaggttga 233  Q
     |||||||||||||||||||||||||| |||||    
T  10579762 ggaggtgttgaacttgtcatatacaaaagttga 10579794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 6426784 - 6426566
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtg 100  Q
    ||||||||||||| |||||||| |||||| |||| ||||||||||||||| ||||| ||||| ||||||||||    |||||   | |||||  |||||     
T  6426784 aattcatggttaagtgatgaaatcatcataatgtatgcttccattttccccaatttacagctacttgatttgaaggtttgccgtgaaatatctgaaggta 6426685  T
Q  101 ttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagct 200  Q
    || |  |||||||||  |  ||||||||| |||   |||||||| |||| | ||||||||  ||||| |||  |||||||||||||  ||| ||| ||||    
T  6426684 tttgtgaagttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccgagct 6426585  T
Q  201 agaggtgttgaacttgtca 219  Q
     ||||||||||| ||||||    
T  6426584 ggaggtgttgaatttgtca 6426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 6416234 - 6416009
Alignment:
Q  6 atggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggc 105  Q
    ||||||||  |||||| | ||||| |||||| ||||||  ||||| ||||||||||||||||||||||   ||||  |   | ||||  ||||| || |     
T  6416234 atggttaagcgatgaaggtatcataatgttttcttccaacttccccaatttgcagctgcttgatttgaatcgttgtaatctcttatctgaaggtatttgt 6416135  T
Q  106 caagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagagg 205  Q
    ||||||||||| |  |||||||||||| || |||||||| ||||||  |||  || |||||| |||  ||||||| |||||  ||| ||| | || ||||    
T  6416134 caagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttcccaacctggagg 6416035  T
Q  206 tgttgaacttgtcatatacaaaggtt 231  Q
    |||||||||||||| |||||||||||    
T  6416034 tgttgaacttgtcaaatacaaaggtt 6416009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 6403133 - 6402889
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtg 100  Q
    ||||||||||| | ||||||||||||||| |  |||||||||||||| || | |||||| |  ||||| ||| |  | ||| |    |||||  |||||     
T  6403133 aattcatggttgagtgatgaaagcatcataagttttgcttccatttttcccagtttgcaacatcttgaattgcgttggtgcgatcgtatatctgaaggta 6403034  T
Q  101 ttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagct 200  Q
    || | ||||||||||  || |||||||| |||||| |||||||| || |    ||||||| |||||| ||| ||||||| ||||||  ||| ||||| ||    
T  6403033 tttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaact 6402934  T
Q  201 agaggtgttgaacttgtcatatacaaaggttgacgatggaacact 245  Q
    ||| ||||||||||||||| |||| |||||||| |||| ||||||    
T  6402933 agaagtgttgaacttgtcagatacgaaggttgatgatgaaacact 6402889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 19632559 - 19632475
Alignment:
Q  154 tgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttgacgatg 238  Q
    ||||||| ||| |||||| ||||||| ||||||  ||| ||| |||||||||||||| ||||||| |||||||||||||| ||||    
T  19632559 tgttcaatagttaacctacttggaataaactttctagttcccaagctagaggtgttggacttgtcgtatacaaaggttgatgatg 19632475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 6410271 - 6410033
Alignment:
Q  9 gttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaa 108  Q
    ||||| ||||||||  |||||| |||||||||||||||| || ||||| || || ||||||||||   |||||||  | |||||  ||||| || | |||    
T  6410271 gttaagtgatgaaataatcattttgtttgcttccatttttcccaatttacaactacttgatttgacgggttgccagcaaatatctgaaggtatttgtcaa 6410172  T
Q  109 gttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgt 208  Q
    |||||| | |  ||||||||| ||| | ||||| || ||||||| ||   || |||||| |||  |||||||||||||  ||| ||| ||||  ||||||    
T  6410171 gttttacagaaatgttgtaagcttaagcatttggacttagcctattgcaaaaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgt 6410072  T
Q  209 tgaacttgtcatatacaaaggttgacgatggaacacttt 247  Q
    |||||| |||| ||||||  ||||| |||| ||| ||||    
T  6410071 tgaactagtcaaatacaagcgttgatgatgaaactcttt 6410033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 6423484 - 6423418
Alignment:
Q  7 tggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttga 73  Q
    ||||||| |||||||| |||||| ||||||||||||||||||||||||||  | || ||||||||||    
T  6423484 tggttaagtgatgaaatcatcataatgtttgcttccattttccctaatttaaaactacttgatttga 6423418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 6432434 - 6432188
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtg 100  Q
    |||||||||||||   ||||||| ||||| |||||||||||||||||||| |||||||| |  ||||||||| |  | || ||    |||    |||||     
T  6432434 aattcatggttaaggaatgaaaggatcataatgtttgcttccattttccccaatttgcaacatcttgatttgcgttggtgtcatcgtataaatgaaggta 6432335  T
Q  101 ttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagct 200  Q
    || | ||||||||||  || ||||||||  |||   |||||||| ||||||| |||  || |||||| |||  |||||||||||||  ||| ||| ||||    
T  6432334 tttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagct 6432235  T
Q  201 agaggtgttgaacttgtcatatacaaaggttgacgatggaacacttt 247  Q
      ||||||||||||||||| ||||||  ||||| |||| ||||||||    
T  6432234 gaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacacttt 6432188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 7994128 - 7994238
Alignment:
Q  121 tgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcat 220  Q
    ||||||||||| ||| |||||||| ||||| | ||| ||| |||||| ||| | ||||||||||||  ||| ||  ||||||||||||||||| |||||     
T  7994128 tgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaa 7994227  T
Q  221 atacaaaggtt 231  Q
    |||||| ||||    
T  7994228 atacaagggtt 7994238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 14820963 - 14820893
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgattt 71  Q
    ||||||||||||||||||||||  |||||| ||| ||||||||||||||| |||||  |||| ||||||||    
T  14820963 aattcatggttaaatgatgaaataatcattttgtatgcttccattttcccaaatttaaagctacttgattt 14820893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 9411596 - 9411555
Alignment:
Q  33 gtttgcttccattttccctaatttgcagctgcttgatttgag 74  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttgag 9411555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 6585216 - 6585307
Alignment:
Q  154 tgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttgacgatggaacact 245  Q
    ||||||| |||||| ||| ||||||| ||||||  |||  ||||| | ||||| |||||||||||| ||||||||||||| |||| ||||||    
T  6585216 tgttcaagagtgaagctacttggaataaactttttagttacccagttggaggtattgaacttgtcagatacaaaggttgatgatgaaacact 6585307  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 6594447 - 6594505
Alignment:
Q  16 gatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgag 74  Q
    ||||||| ||||||  |||||||||| |||||||| | |||| ||||||||||||||||    
T  6594447 gatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 14820793 - 14820720
Alignment:
Q  174 tggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaaaggttgacgatggaacacttt 247  Q
    |||||| ||||||  ||| ||| || |||||||||||||||| ||| |||||||||||||  ||| ||||||||    
T  14820793 tggaattaactttgcagttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacacttt 14820720  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 6596946 - 6596998
Alignment:
Q  193 ccccagctagaggtgttgaacttgtcatatacaaaggttgacgatggaacact 245  Q
    |||||||| ||||||||||||||||||  |||||| ||||| |||| ||||||    
T  6596946 ccccagctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacact 6596998  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 8913817 - 8913881
Alignment:
Q  7 tggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgattt 71  Q
    |||||||  ||||||| |||||| |||||||||||||||||  | ||||||||  ||||||||||    
T  8913817 tggttaacggatgaaatcatcataatgtttgcttccattttttccaatttgcatatgcttgattt 8913881  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 32151574 - 32151483
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatc 92  Q
    |||||||||||||   |||| | |||||  ||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  32151574 aattcatggttaacatatgataacatcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatc 32151483  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18315096 - 18315336
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatc-ga--aag 97  Q
    |||||||||||||  || ||||||||||  || ||| ||||||||||||| ||||||||| |||||||||||||    ||| | |||||| | ||  |||    
T  18315096 aattcatggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaag 18315195  T
Q  98 gtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactg-ttcaacagtgaacctaattggaatgaactttagagtccccc 196  Q
    || || | |||||||||  |||||||| | |||||||  | |||||| ||| ||  || ||||| | |||| |||  |||||||||||||| ||| |||     
T  18315196 gtatttgtcaagttttacgaagttgttctgagattagacagttgaacttag-ctcgtgattcaagaatgaagctacgtggaatgaactttaaagttccca 18315294  T
Q  197 agctagaggtgttgaacttgtcatatacaaaggttgacgatg 238  Q
    | || |||||||||||||||||| ||||||| ||||| ||||    
T  18315295 aactggaggtgttgaacttgtcacatacaaaagttgatgatg 18315336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 17627897 - 17627952
Alignment:
Q  16 gatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgattt 71  Q
    ||||||| |||||  |||||||||||||||||||| |||||||| |||||||||||    
T  17627897 gatgaaaacatcaaaatgtttgcttccattttccccaatttgcaactgcttgattt 17627952  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17636220 - 17636290
Alignment:
Q  1 aattcatggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgattt 71  Q
    |||||||||||||  ||||||||| |||| | | | | | |||||||||| ||||||||||||||||||||    
T  17636220 aattcatggttaagagatgaaagcctcataaagctcgataccattttccccaatttgcagctgcttgattt 17636290  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 27922580 - 27922535
Alignment:
Q  202 gaggtgttgaacttgtcatatacaaaggttgacgatggaacacttt 247  Q
    |||||||||||||||||||||||||| ||||| |||| | ||||||    
T  27922580 gaggtgttgaacttgtcatatacaaatgttgatgatgaagcacttt 27922535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 10614860 - 10614636
Alignment:
Q  7 tggttaaatgatgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggcc 106  Q
    |||||||  |||||| |||| || | ||||||||||| |||||| |||||||| |||||||||||||   ||||| |   | |||   ||||| || | |    
T  10614860 tggttaagcgatgaaggcattataaagtttgcttccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttatatgaaggtatttgtc 10614761  T
Q  107 aagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggt 206  Q
    |||||||||  |  ||||||||||||||| |||||||| ||||||| |||  || |||||| ||| ||||||||||| ||   || ||| | || |||||    
T  10614760 aagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggt 10614661  T
Q  207 gttgaacttgtcatatacaaaggtt 231  Q
    ||||||||||||| |||| ||||||    
T  10614660 gttgaacttgtcaaatacgaaggtt 10614636  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 41889400 - 41889626
Alignment:
Q  24 catcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacata-tcga--aaggtgttggccaagttttaaaaagt 120  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||      |||| | ||  ||||| ||   ||||||||||  |      
T  41889400 catcataatgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtattactcaagttttaaggata 41889499  T
Q  121 tgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcat 220  Q
    |||||||| |||||  |||||||| || ||   ||||||| |||||| ||| ||| ||||||||||| ||| ||| |  | |||||||||||||| ||||    
T  41889500 tgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcat 41889599  T
Q  221 atacaaaggttgacgatggaacacttt 247  Q
    ||||||| ||||| |||| ||||||||    
T  41889600 atacaaaagttgatgatgaaacacttt 41889626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 41901391 - 41901434
Alignment:
Q  31 atgtttgcttccattttccctaatttgcagctgcttgatttgag 74  Q
    ||||| |||||||||||||| |||||||||||||||||||||||    
T  41901391 atgttcgcttccattttccccaatttgcagctgcttgatttgag 41901434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 20478100 - 20478140
Alignment:
Q  193 ccccagctagaggtgttgaacttgtcatatacaaaggttga 233  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  20478100 ccccagctggaggtgttgaacttgtcatatacaaatgttga 20478140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 41901562 - 41901607
Alignment:
Q  202 gaggtgttgaacttgtcatatacaaaggttgacgatggaacacttt 247  Q
    |||||||||||||||||||||||||| ||||| |||| | ||||||    
T  41901562 gaggtgttgaacttgtcatatacaaaagttgatgatgaagcacttt 41901607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 1395 - 1527
Alignment:
Q  106 caagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagagg 205  Q
    ||||||||||  || |||| |||||||||  |||||||| ||||||  |||||| | ||| ||||| ||| ||||||||||  ||| ||  |||||||||    
T  1395 caagttttaaggagatgttataagattagacatttgaacttagcctggtgttcatctgtggacctatttgaaatgaactttgtagttcctaagctagagg 1494  T
Q  206 tgttgaacttgtcatatacaaaggttgacgatg 238  Q
    ||||| |||||||| ||||||| ||||| ||||    
T  1495 tgttggacttgtcaaatacaaatgttgatgatg 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 1037503 - 1037714
Alignment:
Q  17 atgaaagcatcattatgtttgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatc-ga--aaggtgttggccaagtttt 113  Q
    |||||| ||||||  ||||||||||||||||||| ||||||||  | |||||||||||    ||||| |||||||| ||  ||||| || |  |||||||    
T  1037503 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagtttt 1037602  T
Q  114 aaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaac 213  Q
    ||  || ||||||||| ||||  |||||||  ||||||||| ||||| |||||| ||| || |||| ||||||| ||| ||  |  |||||||||| |||    
T  1037603 aaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaac 1037702  T
Q  214 ttgtcatataca 225  Q
    |||||| |||||    
T  1037703 ttgtcacataca 1037714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 586 - 675
Alignment:
Q  137 atttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatacaa 226  Q
    |||||||  ||||||||||||||| |||||| ||| || |||| ||||||| ||| ||  |  |||||||||| ||||||||| ||||||    
T  586 atttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaa 675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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