View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_high_30 (Length: 259)
Name: NF21280_high_30
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 34597755 - 34597536
Alignment:
| Q |
17 |
tgtatgtggtttgaatattcaaccaaccagaagaaaacatctcagactaagtctgttgtactttattgtctgcagcacaccattcacttcatgtcttagg |
116 |
Q |
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| T |
34597755 |
tgtatgtggtttgaatattcaaccaaccagaagaaaacatctcagactaagtctattgtactttactgtctgtagcacaccattcacttcatgtcttagg |
34597656 |
T |
|
| Q |
117 |
tcttaactcttaactattgtcagatcttaatctcaattttataaaaattaaaatagaataaactatcaatttaatctataaactatcactctctaaacca |
216 |
Q |
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| T |
34597655 |
tcttaact-------attgtcagatcttaaagtcaattttataaaaattaaaatagaattaactatcaatttaatctataaactatcacactccaaacca |
34597563 |
T |
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| Q |
217 |
tataaatataacatgtaacttttggtc |
243 |
Q |
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| T |
34597562 |
tataaatataacatgtaacttttggtc |
34597536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34624888 - 34624793
Alignment:
| Q |
1 |
tttaaataagtgtgtatgtatgtggtttgaatattcaaccaaccagaagaaaacatctcagactaagtctgttgtactttattgtctgcagcacac |
96 |
Q |
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| T |
34624888 |
tttaaataagtgtgtatgtatgtggtttgaatattcaaccaaccagaagaaaacatctcagaccaagtctattgtactttattgtctgtagcacac |
34624793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 48483266 - 48483229
Alignment:
| Q |
171 |
agaataaactatcaatttaatctataaactatcactct |
208 |
Q |
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| T |
48483266 |
agaataaaccatcaatttaatctctaaactatcactct |
48483229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 2981344 - 2981304
Alignment:
| Q |
165 |
taaaatagaataaactatcaatttaatctataaactatcac |
205 |
Q |
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||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
2981344 |
taaaaaagaataaactatcaatttaatctttaaaatatcac |
2981304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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