View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21280_high_34 (Length: 239)

Name: NF21280_high_34
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21280_high_34
NF21280_high_34
[»] chr7 (15 HSPs)
chr7 (88-239)||(4845713-4845864)
chr7 (19-239)||(4631170-4631390)
chr7 (119-234)||(4637105-4637220)
chr7 (23-239)||(4672946-4673162)
chr7 (128-239)||(4864165-4864276)
chr7 (100-239)||(4643950-4644089)
chr7 (126-239)||(4667184-4667297)
chr7 (19-234)||(4815896-4816111)
chr7 (19-239)||(4711704-4711924)
chr7 (128-239)||(4696931-4697042)
chr7 (119-234)||(4783567-4783682)
chr7 (172-239)||(4663234-4663301)
chr7 (134-239)||(4653763-4653868)
chr7 (19-58)||(4644131-4644170)
chr7 (19-58)||(4783467-4783506)
[»] chr4 (1 HSPs)
chr4 (23-239)||(18925378-18925594)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 4845713 - 4845864
Alignment:
Q  88 tgacaacagcgaatacgaaattcgaaatgataaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggt 187  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4845713 tgacaacagagaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggt 4845812  T
Q  188 atgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatc 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4845813 atgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatc 4845864  T

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Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 4631390 - 4631170
Alignment:
Q  19 gtctatgccttcttttctctattacactaatctcagtgacacgaactaccattcaaagctacttggttctgacaacagcgaatacgaaattcgaaatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||||| | | |||||| | ||||  ||  |     
T  4631390 gtctatgccttcttttctctattacactaatctcagtgacacgaactaccatttaaagatacttgattttgacagcggtgaataccagattcttaacaac 4631291  T
Q  119 aaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctc 218  Q
    |||| | |||| |  |||||||||||||| | ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  4631290 aaagctatggaaacagtttatagagtcaacgctggtgaaaatcaagttccaccaaattatgatacaggtatgtttcgcaattgggacaatgattttcctc 4631191  T
Q  219 gttacttggagaaagaatatc 239  Q
    |||||||||||||||||||||    
T  4631190 gttacttggagaaagaatatc 4631170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 4637220 - 4637105
Alignment:
Q  119 aaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctc 218  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4637220 aaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaagtgatgatacaggtatgtttcgcaattggggcaatgattttcctc 4637121  T
Q  219 gttacttggagaaaga 234  Q
     |||||||||||||||    
T  4637120 tttacttggagaaaga 4637105  T

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Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 4673162 - 4672946
Alignment:
Q  23 atgccttcttttctctattacactaatctcagtgacacgaactaccattcaaagctacttggttctgacaacagcgaatacgaaattcgaaatgataaag 122  Q
    ||||||||||||||||||||||| || ||||||||| | || || ||||  ||   |||||  |  |||||||  |||||| ||||||  || || ||||    
T  4673162 atgccttcttttctctattacacaaacctcagtgacccaaattatcatttgaaatcacttgacttagacaacacggaataccaaattcataacgaaaaag 4673063  T
Q  123 atttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgtta 222  Q
     |||||| ||||||||||||||||| |||||||||| |||||||| |||  |||| ||||| ||||||||||| ||||||||||||||||||| | ||||    
T  4673062 ctttggaaatggtttatagagtcaacgttggtgaaagtcaagttccaccgggtgacgatactggtatgtttcgtaattgggacaatgattttcatggtta 4672963  T
Q  223 cttggagaaagaatatc 239  Q
    |||||||||| ||||||    
T  4672962 cttggagaaacaatatc 4672946  T

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Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 4864276 - 4864165
Alignment:
Q  128 gagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttgg 227  Q
    |||| |||||||||||||||||| ||||||| |||||||| |||  |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  4864276 gagacggtttatagagtcaatgtcggtgaaagtcaagttccaccgggtgatgatactggtatgtttcgtaattgggacaatgattttcctcgttacttgg 4864177  T
Q  228 agaaagaatatc 239  Q
    ||||| ||||||    
T  4864176 agaaacaatatc 4864165  T

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Target: chr7; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 4644089 - 4643950
Alignment:
Q  100 atacgaaattcgaaatgataaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaat 199  Q
    |||| ||||||  ||||| |||| |||||||||||||||||||||||| ||||||  || |||||||| |||||   | ||||||||||||||||| |||    
T  4644089 ataccaaattcttaatgacaaagctttggagatggtttatagagtcaacgttggtcgaattcaagttccaccaaaccaagatacaggtatgtttcgtaat 4643990  T
Q  200 tgggacaatgattttcctcgttacttggagaaagaatatc 239  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  4643989 tgggacaatgattatcctcgttacttggagaaacaatatc 4643950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 4667297 - 4667184
Alignment:
Q  126 tggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttactt 225  Q
    |||||| ||||||||||||||  |||||||||| |||||||| |||  |||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  4667297 tggagacggtttatagagtcagcgttggtgaaagtcaagttccacctggtgacgatactggtatgtttcgtaattgggacaatgattttcctcgttactt 4667198  T
Q  226 ggagaaagaatatc 239  Q
    ||||||| ||||||    
T  4667197 ggagaaacaatatc 4667184  T

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Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 4815896 - 4816111
Alignment:
Q  19 gtctatgccttcttttctctattacactaatctcagtgacacgaactaccattcaaagctacttggttctgacaacagcgaatacgaaattcgaaatgat 118  Q
    ||||||||||||||||||||||||||| || |||||||||    | || | |   ||| ||| ||||||||||||||  |||||| || |||  ||  |     
T  4815896 gtctatgccttcttttctctattacacaaacctcagtgaccaagattatcgtatcaagttacctggttctgacaacacggaataccaagttcttaacaac 4815995  T
Q  119 aaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctc 218  Q
    |||| ||| |||| ||||||||||||||| |||||| |||||||||||| | |||   | |||||||| |||||||| |||||||||||||||| |||||    
T  4815996 aaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtttcgtaattgggacaatgattctcctc 4816095  T
Q  219 gttacttggagaaaga 234  Q
    ||||||||||||||||    
T  4816096 gttacttggagaaaga 4816111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 4711704 - 4711924
Alignment:
Q  19 gtctatgccttcttttctctattacactaatctcagtgacacgaactaccattcaaagctacttggttctgacaacagcgaatacgaaattcgaaatgat 118  Q
    |||||||||||||||||||||||||||  | || | |||| | || |||| ||  ||   |||||  | ||||||||  |||||| ||||||  || ||     
T  4711704 gtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgac 4711803  T
Q  119 aaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctc 218  Q
    |||| |||||| ||||| ||||||||||| |||||| |||||||||||| |||||   | ||||||||||||||||| |||||||||| |||||||||||    
T  4711804 aaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctc 4711903  T
Q  219 gttacttggagaaagaatatc 239  Q
     |||| |||| ||||||||||    
T  4711904 tttacctggaaaaagaatatc 4711924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 4696931 - 4697042
Alignment:
Q  128 gagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttgg 227  Q
    |||| |||||||||||||||||| ||||  |||||||||| |||||   | ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  4696931 gagacggtttatagagtcaatgtgggtggcaatcaagttccaccaaaccaagatactggtatgtttcgtaactgggacaatgattttcctcgttacttgg 4697030  T
Q  228 agaaagaatatc 239  Q
    ||||| ||||||    
T  4697031 agaaacaatatc 4697042  T

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Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 4783567 - 4783682
Alignment:
Q  119 aaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctc 218  Q
    |||| ||| |||| ||||||||||||||| |||||| |||||||||||| | |||   | |||||||| |||||||| |||||||||||||||| |||||    
T  4783567 aaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtttcgtaattgggacaatgattctcctc 4783666  T
Q  219 gttacttggagaaaga 234  Q
    ||||||||||||||||    
T  4783667 gttacttggagaaaga 4783682  T

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Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 4663301 - 4663234
Alignment:
Q  172 aagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatc 239  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||| ||||||||    
T  4663301 aagtgatgatacaggtatgtttcgttattgggaaaatgattctcctcgttacttggagatagaatatc 4663234  T

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Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 4653868 - 4653763
Alignment:
Q  134 gtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttggagaaag 233  Q
    |||||||| ||||| ||||||||||||||||||| |||||     ||||| ||| ||||||| |||||||| || |||| |||||||||||| ||||||     
T  4653868 gtttatagtgtcaacgttggtgaaaatcaagttccaccaaacctagatactggtttgtttcgtaattgggataacgattatcctcgttacttagagaaac 4653769  T
Q  234 aatatc 239  Q
    ||||||    
T  4653768 aatatc 4653763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 4644170 - 4644131
Alignment:
Q  19 gtctatgccttcttttctctattacactaatctcagtgac 58  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  4644170 gtctatgccttcttttctctattacacaaacctcagtgac 4644131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 4783467 - 4783506
Alignment:
Q  19 gtctatgccttcttttctctattacactaatctcagtgac 58  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  4783467 gtctatgccttcttttctctattacacaaacctcagtgac 4783506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 18925378 - 18925594
Alignment:
Q  23 atgccttcttttctctattacactaatctcagtgacacgaactaccattcaaagctacttggttctgacaacagcgaatacgaaattcgaaatgataaag 122  Q
    ||||||||||||||||||||||| || |||| |||| | ||  | |||| |||| |||||||   ||| ||||   ||||| ||||  | | ||| ||||    
T  18925378 atgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttgaaaacatgaaatacaaaatcagcagtgacaaag 18925477  T
Q  123 atttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgtta 222  Q
      || |||| ||||||||||||||  |||||||| |||||||||| || |||| |||| ||||||||||||||  |||||||||| ||||||||||||||    
T  18925478 tgttagagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggtatgtttcgttattgggacaacgattttcctcgtta 18925577  T
Q  223 cttggagaaagaatatc 239  Q
    |||||||||| ||||||    
T  18925578 cttggagaaacaatatc 18925594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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