View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21280_high_35 (Length: 238)
Name: NF21280_high_35
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_high_35 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 40366872 - 40366649
Alignment:
| Q |
18 |
taatgtttgtgttcacaaatacaaatctagactatttaggagcatacacataaatagaaagaaaaggtaaaattacgaatcgagnnnnnnnnnc---gta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
40366872 |
taatgtttgtgttcacaaatacaaatctagactatttaggagcatacacataaatagaaagaaaaggtaaaattaagaatcgagtttttttttttttgta |
40366773 |
T |
|
| Q |
115 |
ttaatgaaataattatttaatacctctcaggaaaagtatttaatatgtattttttacatgcatgtttaaataatttagatttatggttgtgatcatataa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40366772 |
ttaatgaaataattatttaatacctctcaggaaaagtatttaatatgtattttttacatgcatgtttaaataatttagatttatgattgtgatcatataa |
40366673 |
T |
|
| Q |
215 |
aatttctctagattttactatgat |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40366672 |
aatttctctagattttactatgat |
40366649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University