View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21280_high_36 (Length: 236)

Name: NF21280_high_36
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21280_high_36
NF21280_high_36
[»] chr5 (7 HSPs)
chr5 (1-221)||(1715240-1715461)
chr5 (14-80)||(1739839-1739905)
chr5 (14-55)||(1763966-1764007)
chr5 (14-69)||(1745179-1745234)
chr5 (14-83)||(1725484-1725553)
chr5 (7-85)||(1760891-1760968)
chr5 (1-29)||(1715483-1715511)
[»] chr3 (3 HSPs)
chr3 (14-85)||(3167889-3167962)
chr3 (31-84)||(2023458-2023511)
chr3 (22-85)||(3138597-3138662)
[»] chr8 (2 HSPs)
chr8 (18-57)||(23852755-23852796)
chr8 (18-64)||(23857141-23857189)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1715461 - 1715240
Alignment:
Q  1 agctctaattcagttttatattttgtttccatgtcaatgttattgttaatttgattgttactctctagtggaacttatgtcttggnnnnnnnnnnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  1715461 agctctaattcagttttatattttgtttccatgtcaatgttattgttaatttgattgttactctctagtggaacttatgtcttggtatttatttatttat 1715362  T
Q  101 nnnnnnngttgcaattaatttgattgacccgataagaa-caattaggtaatgccacggggataagcagtttcgttagtcttgaaggaggaaaataaagtg 199  Q
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1715361 ttattttgttgcaattaatttgattgacccgataagaaacaattaggtaatgccacggggataagcagtttcgttggtcttgaaggaggaaaataaagtg 1715262  T
Q  200 gtagagatggcactgaagaagt 221  Q
    ||||||||||||||||||||||    
T  1715261 gtagagatggcactgaagaagt 1715240  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 1739839 - 1739905
Alignment:
Q  14 ttttatattttgtttccatgtcaatgttattgttaatttgattgttactctctagtggaacttatgt 80  Q
    ||||||||||||||| ||||||||||||  |||| ||||||||| ||||||||||| ||| ||||||    
T  1739839 ttttatattttgttttcatgtcaatgttgctgttgatttgattgctactctctagttgaatttatgt 1739905  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 1763966 - 1764007
Alignment:
Q  14 ttttatattttgtttccatgtcaatgttattgttaatttgat 55  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  1763966 ttttatattttgtttccatgtcgatgttattgttaatttgat 1764007  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 1745179 - 1745234
Alignment:
Q  14 ttttatattttgtttccatgtcaatgttattgttaatttgattgttactctctagt 69  Q
    ||||||||||||||| |||| |||||||  |||||||||||||| |||||||||||    
T  1745179 ttttatattttgttttcatggcaatgttgctgttaatttgattgctactctctagt 1745234  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 1725484 - 1725553
Alignment:
Q  14 ttttatattttgtttccatgtcaatgttattgttaatttgattgttactctctagtggaacttatgtctt 83  Q
    ||||||||||||||| ||||||||||||  || | ||||||||| ||||||||| | ||||||| |||||    
T  1725484 ttttatattttgttttcatgtcaatgttgctgctgatttgattgatactctctatttgaacttaagtctt 1725553  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 1760891 - 1760968
Alignment:
Q  7 aattcagttttatattttg-tttccatgtcaatgttattgttaatttgattgttactctctagtggaacttatgtcttgg 85  Q
    ||||||||||||||||||| ||||  ||||||||| ||||||||||| |||| ||  ||||||| ||||||||| |||||    
T  1760891 aattcagttttatattttgttttctgtgtcaatgtcattgttaatttaattgcta--ctctagttgaacttatgacttgg 1760968  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1715511 - 1715483
Alignment:
Q  1 agctctaattcagttttatattttgtttc 29  Q
    |||||||||||||||||||||||||||||    
T  1715511 agctctaattcagttttatattttgtttc 1715483  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 3167889 - 3167962
Alignment:
Q  14 ttttatattttgtttccat--gtcaatgttattgttaatttgattgttactctctagtggaacttatgtcttgg 85  Q
    |||| ||||||||||||||  ||||||||| ||||||||||||||| ||||||| ||| ||| |||| ||||||    
T  3167889 ttttgtattttgtttccataagtcaatgttcttgttaatttgattgctactctccagttgaagttatttcttgg 3167962  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 2023458 - 2023511
Alignment:
Q  31 atgtcaatgttattgttaatttgattgttactctctagtggaacttatgtcttg 84  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| |||| |||||    
T  2023458 atgtcaatgttcttgttaatttgattgctactctctagttgaagttatttcttg 2023511  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 3138662 - 3138597
Alignment:
Q  22 tttgtttccat--gtcaatgttattgttaatttgattgttactctctagtggaacttatgtcttgg 85  Q
    |||||||||||  ||||||||| ||||| ||||||||| ||||||||||| ||| |||| ||||||    
T  3138662 tttgtttccataagtcaatgtttttgttcatttgattgctactctctagttgaagttatttcttgg 3138597  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 23852755 - 23852796
Alignment:
Q  18 atattttgtttcc--atgtcaatgttattgttaatttgattg 57  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  23852755 atattttgtttccttatgtcaatgttattgttaatttgattg 23852796  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 23857141 - 23857189
Alignment:
Q  18 atattttgtttcc--atgtcaatgttattgttaatttgattgttactct 64  Q
    |||||||||||||  ||| ||||||||||||||||||||||| ||||||    
T  23857141 atattttgtttccttatggcaatgttattgttaatttgattgctactct 23857189  T

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