View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_high_6 (Length: 645)
Name: NF21280_high_6
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 294 - 630
Target Start/End: Complemental strand, 21445158 - 21444822
Alignment:
| Q |
294 |
gtgctcctcaaaggtagtagggtattctctctttaatacaattatcacaaccaaacagaatttggnnnnnnnggtagctttttcaataagctgtattaca |
393 |
Q |
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| T |
21445158 |
gtgctcctcaaaggtagtagggtattctctctttaatacaattatcacaaccaaacagaatttggtttttttggtagctttttcaataagctgtattaca |
21445059 |
T |
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| Q |
394 |
aattacaatgtcctgcatgtaaatactaaagtgaccaaaacttttttagatttctagggtcaaggtcaactttaaggtatcgtttttgcatgaataatat |
493 |
Q |
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| T |
21445058 |
aattacaatgtcctgcatgtaaatactaaagtgaccaaaacttttttagatttctagggtcaaggtcaactttaaggtatcgtttttgcatgaataatat |
21444959 |
T |
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| Q |
494 |
ccaaaaaatatatcttattgttatactggtttccattttggtttttgctttgttctaaagaatatataatttagacacattatggtttcaacattatttg |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21444958 |
ccaaaaaatatatcttattgttatactggtttccattttggtttttgctttgttctaaagaatatataatttagacacattatggtttcatcattatttg |
21444859 |
T |
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| Q |
594 |
acaattttgtttctgacttgcactcaccatatcattg |
630 |
Q |
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| T |
21444858 |
acaattttgtttctgacttgcactcaccatatcattg |
21444822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 21445415 - 21445710
Alignment:
| Q |
1 |
ggtctttaactcatagtcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcg |
100 |
Q |
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| T |
21445415 |
ggtctttaactcgtaatcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcg |
21445514 |
T |
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| Q |
101 |
tctacagatccaacctggagcgcaaaatacaaaaggactcaaaattagttaaaagtactactatgtgtagcatcgatactttcagattgaaaatgtgtca |
200 |
Q |
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| T |
21445515 |
tctacagatccaacctggagcgcaaaatacaaaaggactcaaaattagttaaaagtactactatgtgtagcatcgatactttcagattgaaaatgtgtca |
21445614 |
T |
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| Q |
201 |
aatgtctgacaccgaccgacacaccaccgatactctagtttacattgagttgatttcatattctcaaattattatcagtgttgtctagagtctgtg |
296 |
Q |
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| T |
21445615 |
aatgtctgacaccgaccgacacaccaccgatactctagtttacattgagttgatttcatattctcaaattattatcagtgttgtctagagtctgtg |
21445710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 40686896 - 40686811
Alignment:
| Q |
17 |
tcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcgtc |
102 |
Q |
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|||||||||| |||||| ||| |||| |||||||| |||||| | ||| || ||||||||||||||||| |||||||||||||| |
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| T |
40686896 |
tcatcatctgaccaatatccactttcaggcacatcttgcattgccaaatcatcatactcttcatcagacttggttgattcctcgtc |
40686811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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