View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_high_7 (Length: 595)
Name: NF21280_high_7
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 10 - 573
Target Start/End: Complemental strand, 24129980 - 24129406
Alignment:
| Q |
10 |
gcagagatcaaaatcaagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatatgtggctaccagattaacctaatc |
109 |
Q |
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| T |
24129980 |
gcagagatcaaaatcaagactgatagtattaccattattgctgtcaaattcggcttacacttaaaattgactaatatgtggcaaccagattaacctaatc |
24129881 |
T |
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| Q |
110 |
cactatagcagttacagatctttagtccttaacctattccaactatagcagttacaaagcttcactccttgaaacattttcaaaagagtcaagcagtttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24129880 |
cactatagcagttacagatctttagtccttaacctattccaactatagcagttacaaagcttcactccttgaaacattttcaaaagagtcaagcagtttc |
24129781 |
T |
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| Q |
210 |
caccnnnnnnnnnnnnnctctcccggtact-----------gagtagtacatctaacatgcatgcattgttgcatgtaaatatgctaaacgaaatacaat |
298 |
Q |
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| T |
24129780 |
caccaaaaaaagaaaaactctcccggtactatgtattgatcgactagtacatctaacatgcacacattgttgcatgtaaatatgctaaacgaaatacaat |
24129681 |
T |
|
| Q |
299 |
atacatatgattgaacnnnnnnnggccagaagtttcggccttaccaatgctaacaagcatttcaattggtactccgtattgcctgcatttgaacttagca |
398 |
Q |
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| T |
24129680 |
atacatatgattgaacaaaaaaaggccagaagtttcggccttaccaatgctaacaagcatttcaattggtactccataatgcctgcatttgaacttcgca |
24129581 |
T |
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| Q |
399 |
gatatgaagcaattttcttggatatttttatcctctattgaagtttcattctccgcaatgaaagatatgctaagaaacggtaaccgaaaaccatggcaat |
498 |
Q |
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| T |
24129580 |
gatatgaagcaattttcttggatatttttatcctctattgaagtttcattcttcgcaacgaaagatatgccaagaaacggtaaccgaagaccatggcaat |
24129481 |
T |
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| Q |
499 |
cagagcaactacttctgtcaaaccaccgtcaattttgactccatttacgacgggtgtgagatgttcgtattgcac |
573 |
Q |
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| T |
24129480 |
cagagcaactacttctgtcaaaccaccgtcaattttgactccatttacgataggtgtgagatgttcatattgcac |
24129406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 396 - 573
Target Start/End: Complemental strand, 24147565 - 24147387
Alignment:
| Q |
396 |
gcagatatgaagcaattttc-ttggatatttttatcctctattgaagtttcattctccgcaatgaaagatatgctaagaaacggtaaccgaaaaccatgg |
494 |
Q |
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| T |
24147565 |
gcagatataaagcacttttccttggatatttttaacctctattgaagtttcattcgccgcaacgaaagatatgccaagaaacggtaaccaaaaaccatgg |
24147466 |
T |
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| Q |
495 |
caatcagagcaactacttctgtcaaaccaccgtcaattttgactccatttacgacgggtgtgagatgttcgtattgcac |
573 |
Q |
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| T |
24147465 |
caatcagagcagctacttctgttaaaccactgtcaattttgattccatttacgataggtgtgagatgttcatattgcac |
24147387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 24147961 - 24147793
Alignment:
| Q |
42 |
cattattgctgtcaaattcggcttacacttaaaattgactaatatgtggctaccagattaacctaatccactatagcagttacagatctttagtccttaa |
141 |
Q |
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|||||||| |||||||||||| |||| |||||||||||||||||||| | ||||||||||| |||||| ||| ||||||| | ||| ||||||||| |
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| T |
24147961 |
cattattgttgtcaaattcggtttac--ttaaaattgactaatatgtgctaagaagattaacctagtccactgtagaagttacatagcttcagtccttaa |
24147864 |
T |
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| Q |
142 |
cctattccaactatagcagttacaaagcttcactccttgaaacattttcaaaagagtcaagcagtttccacc |
213 |
Q |
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| T |
24147863 |
cctattcca-ctatagcagttacaaagcttcattccctgaaacattttcaaaagagtgaagcagtttccacc |
24147793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 250 - 370
Target Start/End: Complemental strand, 24147748 - 24147628
Alignment:
| Q |
250 |
tctaacatgcatgcattgttgcatgtaaatatgctaaacgaaatacaatatacatatgattgaacnnnnnnnggccagaagtttcggccttaccaatgct |
349 |
Q |
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|||| ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||| || |||| |||| ||||||||| |
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| T |
24147748 |
tctagcatgcatgcattgttgcatttaaacatgctaaatgaaatacaatatacatatgattgaacaaaaaaacgcctgagttttcagcctcaccaatgct |
24147649 |
T |
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| Q |
350 |
aacaagcatttcaattggtac |
370 |
Q |
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| T |
24147648 |
aacaagcatgtcaattggtac |
24147628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 532
Target Start/End: Original strand, 43529704 - 43529800
Alignment:
| Q |
436 |
ttgaagtttcattctccgcaatgaaagatatgctaagaaacggtaaccgaaaaccatggcaatcagagcaactacttctgtcaaaccaccgtcaatt |
532 |
Q |
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||||| |||||| | ||||| |||| |||||| || ||||||||||| ||||||||||| || |||||||| || || ||| ||||| ||||||| |
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| T |
43529704 |
ttgaattttcatccaccgcagagaaaaatatgccaataaacggtaaccaaaaaccatggctattagagcaacaacctcattcataccactgtcaatt |
43529800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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