View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_high_9 (Length: 483)
Name: NF21280_high_9
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Original strand, 35071666 - 35072137
Alignment:
| Q |
7 |
tggacatcatcacgtaggtgctttatctaacccgtattaatgcttatgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaa |
106 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071666 |
tggacatcaacacgtaggtgctttatctaactcgtattaatgcttatgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaa |
35071765 |
T |
|
| Q |
107 |
aaacaaatagccaaaatggaacatttttggattcaaatttcaa---------------cttttcataattactctcactgtgaactctgattggtcaaac |
191 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |
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| T |
35071766 |
aaacaaatagccaaaatggaacatttttggattcaaatttcaatccacacgaacagaactgttcattattactctcactgtgaactctgattggtcaaac |
35071865 |
T |
|
| Q |
192 |
gatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagt |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071866 |
gatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagt |
35071965 |
T |
|
| Q |
292 |
aaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcact |
391 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071966 |
aaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcact |
35072065 |
T |
|
| Q |
392 |
cttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggct |
463 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072066 |
cttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggct |
35072137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 459
Target Start/End: Original strand, 35072805 - 35072973
Alignment:
| Q |
291 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
390 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || ||| ||||||| || |||||||||| || |
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| T |
35072805 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaac |
35072904 |
T |
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| Q |
391 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatg |
459 |
Q |
| |
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| T |
35072905 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatg |
35072973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 459
Target Start/End: Complemental strand, 35107055 - 35106887
Alignment:
| Q |
291 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
390 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
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| T |
35107055 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaac |
35106956 |
T |
|
| Q |
391 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatg |
459 |
Q |
| |
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|| ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |
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| T |
35106955 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatg |
35106887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 34919235 - 34919170
Alignment:
| Q |
209 |
tcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaattta |
274 |
Q |
| |
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||||||||||| ||||||||||||||||| |||| || ||| ||| ||||||||||||| |||| |
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| T |
34919235 |
tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccatttta |
34919170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 459
Target Start/End: Original strand, 24040861 - 24041029
Alignment:
| Q |
291 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
390 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
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| T |
24040861 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaac |
24040960 |
T |
|
| Q |
391 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatg |
459 |
Q |
| |
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|| ||||||||| ||||| |||||||| || || ||||| || || | |||||| ||||| ||||| |
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| T |
24040961 |
cctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatg |
24041029 |
T |
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