View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_12 (Length: 481)
Name: NF21280_low_12
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 26113469 - 26113250
Alignment:
| Q |
20 |
acttagtgggataagactacattgttgttgttgtagaaagtggaagatcatgattaagaaatctgttttgaattggagttttccttactgttgattgacg |
119 |
Q |
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| T |
26113469 |
acttagtgggataagactacattgttgttgttgtagaaagtggaaaatcataattaagaaatctgttttgaattggagttttccttactgttgattgacg |
26113370 |
T |
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| Q |
120 |
aaagattctgcgcaattattgattcatatgaaaaggactcaatctaaattttattacatataaaagaagtgtccaacaaccaatgtaacataatttatat |
219 |
Q |
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| T |
26113369 |
aaagattctgcgcaattattgattcatatgaaaaggactcaatctaaattttattacatataaaagaagtgtccaacaaccaatgtaacatgatttatat |
26113270 |
T |
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| Q |
220 |
gcagagttttttaatttatt |
239 |
Q |
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| T |
26113269 |
gcagagttttttaatttatt |
26113250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 238 - 466
Target Start/End: Complemental strand, 26113215 - 26112987
Alignment:
| Q |
238 |
ttttggttgtgcttttgcaggtactcattctcagttgtttctaaggatgaaattccactaaatgaatatgcttttcgaatttccggtagtaccaccattc |
337 |
Q |
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|||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
26113215 |
tttttgttgtgattttgcaggtattcattctcagttgtttctaaggatgaaattccactaaatgaatatgcttttcgaatttccggtagtgcctccattc |
26113116 |
T |
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| Q |
338 |
ttttattttaatgctcattactcattgttgcataccaggttttatatttaacaattaattagttgttagaaatgttagtacttagcgagggtattcgaac |
437 |
Q |
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| T |
26113115 |
ttttattttaatgctcattactcattgttgcataccaggttttatatttaacaactaattagttgttagaaatattagtacttcgcgagggtattcgaac |
26113016 |
T |
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| Q |
438 |
ccacaatctctatctatccggttcctatg |
466 |
Q |
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| T |
26113015 |
ccacaatctctatctctccggttcctatg |
26112987 |
T |
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