View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_13 (Length: 463)
Name: NF21280_low_13
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Complemental strand, 43762360 - 43761940
Alignment:
| Q |
13 |
aatatatactaagaatacatacaacacattactatgtctaaggttggcatgttctgttaaataaaaaagttacgtctaatgcagtaatactacataagca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43762360 |
aatatatactaagaatacatacaacacattactatgtcaaaggttggcatgttctgttaaataaaaaagctacgtctaatgcagtaatactacataagca |
43762261 |
T |
|
| Q |
113 |
aaaatgtaagatgttcttctaatcgacttactggtcacaatttaaaattataaatatgcttgccatcccaaagaaaagaagaactcatggatagaatcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43762260 |
aaaatgtaagatgttcttctaatcgacttactggtcacaatttaaaattataaatatgcttgccatcccaaagaaaagaagaactcgtggatagaatcat |
43762161 |
T |
|
| Q |
213 |
tgtctagcacacctgatgattatggcatggaaccacctgatcttaaaagggaggttctaagacttgaacctcaaattcacaaggtcaatggcatggttgg |
312 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43762160 |
tgtctagcacacctgatgattatggtatggaaccacctgatcttaaaagggaggttctaagacttgaacctcaaattcacaaggtcaatggcatggttgg |
43762061 |
T |
|
| Q |
313 |
ctaccaacatcagggttacccccacagtgggcaattacctcctacttctctctacccccaataacgtcttgatttgaatattgaccacaaataacttaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
43762060 |
ctaccaacatcagggttacccccacagtgggcaattacctcctacttctctctacccccaataacgtcttaatttgaatattgaccataaataacttaat |
43761961 |
T |
|
| Q |
413 |
caaacaataaaaccatcttaa |
433 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43761960 |
caaacaataaaaccatcttaa |
43761940 |
T |
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