View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_15 (Length: 438)
Name: NF21280_low_15
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 55950586 - 55950997
Alignment:
| Q |
9 |
acatcatcaggttcacatccaaacaacggcatcttttcaaaccactccacagctttttcaggcaaataacaagacctagcacaactaattatagtcgaaa |
108 |
Q |
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| T |
55950586 |
acatcatccggttcacatccaaacaacggcatcttttcaaaccactccacagctttatcaggcaaataacaagacctagcacaactaattatagtcgaaa |
55950685 |
T |
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| Q |
109 |
aagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgcaccatccaaatccttacactttctaaacaccttaagggtaac |
208 |
Q |
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| T |
55950686 |
aagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgcaccatccaaatccttacactttctaaacaccttaagggtaac |
55950785 |
T |
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| Q |
209 |
attgtaaagaattacctccctagtgggtatgctcttcctttgaacatactgaagaacaaaaggtacaacaacagaattctccatattattgatgataatt |
308 |
Q |
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| T |
55950786 |
attgtaaagaattacctccctagtgggtatgctcttcctttgaacatactgaagaacaaaaggtacaacaacagaattctccatattattgatgataatt |
55950885 |
T |
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| Q |
309 |
acggcgtcttgttctaaaaccttatcacccaaacacttcaaaatttgagaaacatcatgttcagtgggttcacatgaatccaaagcgtttgaaagcttaa |
408 |
Q |
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| T |
55950886 |
acagcgtcttgttctataaccttatcacccaaacacttcaaaatttgagaaacatcatgttcagtgggttcacatgaatccaaagcgtttgaaagcttaa |
55950985 |
T |
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| Q |
409 |
caagagaactgt |
420 |
Q |
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| T |
55950986 |
caagagaactgt |
55950997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 9674201 - 9674298
Alignment:
| Q |
87 |
gcacaactaattatagtcgaaaaagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgcaccatccaaatccttaca |
184 |
Q |
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| T |
9674201 |
gcacaattaatcatagtagtaaaagtaatattatccggcttaacccctctttgaagcatttcatcaaaaaccttctgtgcaccatcaaaatcattaca |
9674298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 9649872 - 9649953
Alignment:
| Q |
86 |
agcacaactaattatagtcgaaaaagtaacattatcaggcttcacacctctctgaagcatttcaccaaacaccttctctgca |
167 |
Q |
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||||||| |||| || |||||||| |||||| || ||||||||| ||||| |||||||||||| |||||| ||||||||| |
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| T |
9649872 |
agcacaagtaatcatcgtcgaaaacgtaacaacattaggcttcacccctctttgaagcatttcatcaaacagtttctctgca |
9649953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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