View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_16 (Length: 432)
Name: NF21280_low_16
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 178 - 414
Target Start/End: Original strand, 34625218 - 34625454
Alignment:
| Q |
178 |
atgtcaagtacaagtactcactcacacataatgagaaaatcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgtt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625218 |
atgtcaagtacaagtactcactcacacataatgagaaaatcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgtt |
34625317 |
T |
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| Q |
278 |
ttcgaaatgcttttgtgtgatttcatttaatgtttgattaatcttgaatcctagacacttaatgaaataatttagagaatcacaaaatccgagttttgca |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34625318 |
ttcgaaatgcttttgtgtgatttcatttaatgtttgattaatcttgaatcctagacacttaatgaaataatttagagaatcgcaaaatccgagttttgca |
34625417 |
T |
|
| Q |
378 |
ttcctaagtcctaaccattactgttacataagagggg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34625418 |
ttcctaagtcctaaccattactgttacataagagggg |
34625454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 178 - 414
Target Start/End: Original strand, 34598100 - 34598337
Alignment:
| Q |
178 |
atgtcaagtacaagtactcactcacacataatgagaaaatcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgtt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34598100 |
atgtcaagtacaagtactcactcacacataatgagaaaatcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgtt |
34598199 |
T |
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| Q |
278 |
ttcgaaatgcttttgtgtgatttcatttaatgtttgattaatcttgaatcctagacacttaatgaaataatttagagaatcacaaaatccgagttttgca |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34598200 |
ttcgaaatgcttttgtgtgatttcatttaatgtttgattaatcttgaatcctagacacttaatgaaataatttagagaatcacaaaatccgagttttgca |
34598299 |
T |
|
| Q |
378 |
tt-cctaagtcctaaccattactgttacataagagggg |
414 |
Q |
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|| |||||||||||||||||||| |||||||| ||||| |
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| T |
34598300 |
ttccctaagtcctaaccattacttttacataaaagggg |
34598337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 34597947 - 34597796
Alignment:
| Q |
1 |
ccattagagagaatttggatttggactattcaaagtcc------------ttcaaaacaagaatacggaaagaatagtgattcaaataattcaattcaat |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34597947 |
ccattagagagaatttggatttggactattcaaagtccaaaaacaagtccttcaaaacaagaatacggaaagaatagtgattcaaataattcaattcaat |
34597848 |
T |
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| Q |
89 |
tgattcttagcttaggtaggtgtagatgtgtgttgctacgttgcgtgcgtca |
140 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34597847 |
tgattcttagcttaggtaggtgtagatgtgtgttactacgttgcgtgcgtca |
34597796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 34625065 - 34624914
Alignment:
| Q |
1 |
ccattagagagaatttggatttggactattcaaagtcc------------ttcaaaacaagaatacggaaagaatagtgattcaaataattcaattcaat |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625065 |
ccattagagagaatttggatttggactattcaaagtccaaaaacaagtccttcaaaacaagaatacggaaagaatagtgattcaaataattcaattcaat |
34624966 |
T |
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| Q |
89 |
tgattcttagcttaggtaggtgtagatgtgtgttgctacgttgcgtgcgtca |
140 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34624965 |
tgattcttagcttaggtaggtgtagatgtgtgttactacgttgcgtgcgtca |
34624914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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