View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_17 (Length: 432)
Name: NF21280_low_17
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 34625041 - 34625454
Alignment:
| Q |
1 |
tccaaatccaaattctctctaatggcagcatcatcagaatccatactcgatcacatccctctctttgccaaagaacttctagccggtggtcttgctggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625041 |
tccaaatccaaattctctctaatggcagcatcatcagaatccatactcgatcacatccctctctttgccaaagaacttctagccggtggtcttgctggtg |
34625140 |
T |
|
| Q |
101 |
gctttgctaaaactgttgttgctcctcttgaacgtctcaaaattctctttcaggtactttctttaattcttctttttatgtcaagtacaagtactcactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34625141 |
gctttgctaaaactgttgttgctcctcttgaacgtctcaaaattctttttcaggtactttctttaattctcctttttatgtcaagtacaagtactcactc |
34625240 |
T |
|
| Q |
201 |
acacataatgagaaaatcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgttttcgaaatgcttttgtgtgattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625241 |
acacataatgagaaaatcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgttttcgaaatgcttttgtgtgattt |
34625340 |
T |
|
| Q |
301 |
catttaatgtttgattaatcttgaatcctagacacttaatgaaataatttagagaatcacaaaatccgagttttgcattcctaagtcctaaccattactg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34625341 |
catttaatgtttgattaatcttgaatcctagacacttaatgaaataatttagagaatcgcaaaatccgagttttgcattcctaagtcctaaccattactg |
34625440 |
T |
|
| Q |
401 |
ttacataagagggg |
414 |
Q |
| |
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|||||||||||||| |
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| T |
34625441 |
ttacataagagggg |
34625454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 34597923 - 34598337
Alignment:
| Q |
1 |
tccaaatccaaattctctctaatggcagcatcatcagaatccatactcgatcacatccctctctttgccaaagaacttctagccggtggtcttgctggtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34597923 |
tccaaatccaaattctctctaatggcagcatcatcagaatccatactcgatcacatccctctctttgccaaagaacttctagccggtggtcttgctggtg |
34598022 |
T |
|
| Q |
101 |
gctttgctaaaactgttgttgctcctcttgaacgtctcaaaattctctttcaggtactttctttaattcttctttttatgtcaagtacaagtactcactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34598023 |
gctttgctaaaactgttgttgctcctcttgaacgtctcaaaattctttttcaggtactttctttaattctcctttttatgtcaagtacaagtactcactc |
34598122 |
T |
|
| Q |
201 |
acacataatgagaaaatcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgttttcgaaatgcttttgtgtgattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34598123 |
acacataatgagaaaatcacacaattctttaatcacaaatgtccgtgctacataccttacttctttgcttttttgttttcgaaatgcttttgtgtgattt |
34598222 |
T |
|
| Q |
301 |
catttaatgtttgattaatcttgaatcctagacacttaatgaaataatttagagaatcacaaaatccgagttttgcatt-cctaagtcctaaccattact |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34598223 |
catttaatgtttgattaatcttgaatcctagacacttaatgaaataatttagagaatcacaaaatccgagttttgcattccctaagtcctaaccattact |
34598322 |
T |
|
| Q |
400 |
gttacataagagggg |
414 |
Q |
| |
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|||||||| ||||| |
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|
| T |
34598323 |
tttacataaaagggg |
34598337 |
T |
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