View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_18 (Length: 419)
Name: NF21280_low_18
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 2865891 - 2866292
Alignment:
| Q |
13 |
aatatttaattaaaagcaacatttgaaaaaccaaatcggaaacaaaccagcgaaacttccaagtcgtggttcaacaactttaaaccgttcgaaacatgat |
112 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2865891 |
aatatttaattaaaagcaacattttaaaaaccgaatcggaaacaaaccagcaaaacttccaagtcgtggttcaacaactttaaaccgttcgaaacaggac |
2865990 |
T |
|
| Q |
113 |
gaaaccataatcgaacggtttaaataatcaaatcttcgacattgttagtttgcggttcaactggttaaaccgttcgattcggttttaaaaacattgatta |
212 |
Q |
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||||||||| | |||| || |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2865991 |
gaaaccatagtttaacgattaaaataatcaaatcttcgacaatgttagtttgcggttcaaccggttaaaccgttcgattcggttttaaaaacattgatta |
2866090 |
T |
|
| Q |
213 |
aaatgttgcttaatagttgaactgccttccagtgtaggtctgaccaaaagaccaaccagcaggagcagcattgaatgaaaccacactgtgaccattactt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2866091 |
aaatgttgcttaatagttgaactgccttccagtgtaggtctgaccaaaggaccaaccagcaggagcagcattgaatgaaaccacactgtgaccattactt |
2866190 |
T |
|
| Q |
313 |
gtggtgacaacaaaggaaagactttgtccattaaggtaagagttactttgccaattttgtccccaattccttgacatggcttgccatctagatcttgaac |
412 |
Q |
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| T |
2866191 |
gtggtgacaacaaaggaaagactttgtccattaaggtaagagttactttgccaattttgcccccaattccttgacatggcttgccatctagatcttgaac |
2866290 |
T |
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| Q |
413 |
ct |
414 |
Q |
| |
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|| |
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| T |
2866291 |
ct |
2866292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 231 - 414
Target Start/End: Original strand, 3803343 - 3803526
Alignment:
| Q |
231 |
gaactgccttccagtgtaggtctgaccaaaagaccaaccagcaggagcagcattgaatgaaaccacactgtgaccattacttgtggtgacaacaaaggaa |
330 |
Q |
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| T |
3803343 |
gaactgccttccagtgtaggtttgtccaaaggaccaactgggtggggcaacattaaatgacacaatactatgaccattaccagtggtgactacaaatgaa |
3803442 |
T |
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| Q |
331 |
agactttgtccattaaggtaagagttactttgccaattttgtccccaattccttgacatggcttgccatctagatcttgaacct |
414 |
Q |
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| T |
3803443 |
agactttgtccattcaaataagagttgctctgccaattttgtccccaattccttgacatggcttgccatctagtccttgaacct |
3803526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 231 - 414
Target Start/End: Original strand, 3814012 - 3814195
Alignment:
| Q |
231 |
gaactgccttccagtgtaggtctgaccaaaagaccaaccagcaggagcagcattgaatgaaaccacactgtgaccattacttgtggtgacaacaaaggaa |
330 |
Q |
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||||||||||||||||||||| || ||||| ||||||| | || ||| |||| ||||| || | ||| |||||||||| |||||||| ||||| ||| |
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| T |
3814012 |
gaactgccttccagtgtaggtttgtccaaaggaccaactgggtggggcaacattaaatgacacaatactatgaccattaccagtggtgactacaaatgaa |
3814111 |
T |
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| Q |
331 |
agactttgtccattaaggtaagagttactttgccaattttgtccccaattccttgacatggcttgccatctagatcttgaacct |
414 |
Q |
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| T |
3814112 |
agactttgtccattcaaataagagttgctctgccaattttgtccccaattccttgacatggcttgccatctagtccttgaacct |
3814195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 27488065 - 27488139
Alignment:
| Q |
336 |
ttgtccattaaggtaagagttactttgccaattttgtccccaattccttgacatggcttgccatctagatcttga |
410 |
Q |
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| T |
27488065 |
ttgtccattaagataagagttgctttgccaattttgaccccaatttcttgacattggttgccatccagttcttga |
27488139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 27476807 - 27476869
Alignment:
| Q |
336 |
ttgtccattaaggtaagagttactttgccaattttgtccccaattccttgacatggcttgcca |
398 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||| |||||||| |||||||| | |||||| |
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| T |
27476807 |
ttgtccattaagataagagttgctttgccaattttggccccaatttcttgacattggttgcca |
27476869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 11592966 - 11592893
Alignment:
| Q |
325 |
aaggaaagactttgtccattaaggtaagagttactttgccaattttgtccccaattccttgacatggcttgcca |
398 |
Q |
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| T |
11592966 |
aaggagagactttgtccatcaaggttagagttgctttgccaattttggccccaatttctagacattggttgcca |
11592893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 31999476 - 31999545
Alignment:
| Q |
334 |
ctttgtccattaaggtaagagttactttgccaattttgtccccaattccttgacatggcttgccatctag |
403 |
Q |
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||||||||||||||||| || || || ||||| ||||| |||||||| |||||||||| |||||| |||| |
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| T |
31999476 |
ctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctag |
31999545 |
T |
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