View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_19 (Length: 407)
Name: NF21280_low_19
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 38495785 - 38496070
Alignment:
| Q |
20 |
gggataacggacgactggatcggagacgaccagagtgagagaccggaaatccagtacctcatcgccggaacatttcaattgagaccggagtgttgctgca |
119 |
Q |
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| T |
38495785 |
gggataacggacgactggatcggagacgaccggagtgagagaccggaaatccagtacctcatcgccggaacatttcaattgagaccggagtgttgctgca |
38495884 |
T |
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| Q |
120 |
gagagctt--gataaagaaaacatggttttgtgctgcacttggtaaaggaaggagacggtggttaaaggcaagggagagaagaaaaagaaat-------t |
210 |
Q |
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| T |
38495885 |
gagagctttggataaagaaaacatggttttgtactgcacttggtaaaggaaggagacggtggttaaaggcaaggaagagaagaaaaataaataaaaaaat |
38495984 |
T |
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| Q |
211 |
nnnnnnnnnnnnngtattaagcaacagtgaatatacgaatggtgtcgtatatgtgtctcaacttttgtgttcagttatcattattg |
296 |
Q |
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| T |
38495985 |
aaattaaaaaaaagtattaagcaacagtgaatatacggatggtgtcgtatatgtgtctcaacttttgtgttcagttatcattattg |
38496070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 27600959 - 27600908
Alignment:
| Q |
318 |
aaaatataagatattgacttttagctaaatagtttgacttctacttcttatg |
369 |
Q |
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| T |
27600959 |
aaaatataagatattgacttttagctaaatagtttgacttctacttcttatg |
27600908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 10512595 - 10512529
Alignment:
| Q |
224 |
gtattaagcaacagtgaatatacgaatggtgtcgtatatgtgtctcaacttttgtgttcagttatcatt |
292 |
Q |
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| T |
10512595 |
gtattaagcaacagtaaata--cgtatggtgtcgtatatgtgtctaatgttttgtgttcagttatcatt |
10512529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 17341676 - 17341742
Alignment:
| Q |
224 |
gtattaagcaacagtgaatatacgaatggtgtcgtatatgtgtctcaacttttgtgttcagttatcatt |
292 |
Q |
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| T |
17341676 |
gtattaagcaacagtaaata--cgtatggtgtcgtatatgtgtctaatgttttgtgttcaattatcatt |
17341742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 60 - 296
Target Start/End: Original strand, 52113841 - 52114073
Alignment:
| Q |
60 |
gaccggaaatccagtacctcatcgccggaacatttcaattgagaccggagtgttgctgcagagagctt--gataaagaaaacatggttttgtgctgcact |
157 |
Q |
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| T |
52113841 |
gaccggaaatccagtacctcatcgccggaacatttcaattgagaccggagtgttgctggagagagctttggataaagaaaacatggttttgt-------- |
52113932 |
T |
|
| Q |
158 |
tggtaaaggaaggagacggtggttaaaggcaagggagagaagaaaaagaaatt----nnnnnnnnnnnnngtattaagcaacagtgaatatacgaatggt |
253 |
Q |
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| T |
52113933 |
--gtaaaggaaggagacggtggttaaaggcaagggagagaagaaaaagaaattaaaaaaaaaaaaaaaaagtattaagcaacagtgaatatacggatggt |
52114030 |
T |
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| Q |
254 |
gtcgtatatgtgtctcaacttttgtgttcagttatcattattg |
296 |
Q |
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| T |
52114031 |
gtcgtatatgtgtctcaacttttgtgtttagttatcattattg |
52114073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 20808765 - 20808704
Alignment:
| Q |
225 |
tattaagcaacagtgaatatacgaatggtgtcgtatatgtgtctcaacttttgtgttcagttat |
288 |
Q |
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| T |
20808765 |
tattaagcaacagtaaata--cttatggtgtcgtatatgtgtctaatgttttgtgttcagttat |
20808704 |
T |
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