View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_21 (Length: 381)
Name: NF21280_low_21
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_21 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 751922 - 752275
Alignment:
| Q |
18 |
gaatcattcaattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaag |
117 |
Q |
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| T |
751922 |
gaatcattcaattttcttgaagatgaacaattaaggttatttgctagcatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaagg |
752021 |
T |
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| Q |
118 |
gagatcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatct |
217 |
Q |
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| T |
752022 |
gagatcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatct |
752121 |
T |
|
| Q |
218 |
cgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagc |
317 |
Q |
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| T |
752122 |
cccgcaaaacaacatgtctcaagcacacatttatccaccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagc |
752221 |
T |
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| Q |
318 |
tctcaaccctctcatatggtttcaactgcacaaagctctcaaccttctcctatg |
371 |
Q |
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| T |
752222 |
tctcaaccctctcatatggtttcaactgcacaaagctctcaaccttctcctatg |
752275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 355
Target Start/End: Complemental strand, 7327487 - 7327174
Alignment:
| Q |
42 |
gaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatcttaggggaaaatcaatag |
141 |
Q |
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| T |
7327487 |
gaacaagtgaggtcatttgctagcatgttggattccaagcttgatgcttgtaatcaaaggatgcatatgctaaaaggagatcttaaaggaaaaacaatag |
7327388 |
T |
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| Q |
142 |
ctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagc |
241 |
Q |
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||| |||| || ||||| |||||| |||| || ||| |||| | |||||| ||||||||||||||||||||| ||||||||||||||| | |||| |
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| T |
7327387 |
ctcatgaatcacacaaggttgatatacttataggtaaccctaacttagcctcaaagccaagtagctacttcaatctcatgcaaaacaacatgtttgaagc |
7327288 |
T |
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| Q |
242 |
acacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctcatatggtttca |
341 |
Q |
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| T |
7327287 |
aaaaattcatcctccattgatgaatattaatgataaaaccccattagggttttggcaacttcaactcggacaaagctctcaaccttcttctatgatttcc |
7327188 |
T |
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| Q |
342 |
actgcacaaagctc |
355 |
Q |
| |
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| ||| |||||||| |
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| T |
7327187 |
aatgcgcaaagctc |
7327174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 355
Target Start/End: Original strand, 746137 - 746329
Alignment:
| Q |
163 |
ataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgat |
262 |
Q |
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||||||||| |||||||||||||||| ||||||| || ||| | ||||||||||| |||| | |||||| ||||||| | ||||| |||||||||| |
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| T |
746137 |
ataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagttaaaatttactctccattgat |
746236 |
T |
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| Q |
263 |
gaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctcatatggtttcaactgcacaaagctc |
355 |
Q |
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| T |
746237 |
gaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttccagtgcacaaagctc |
746329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 746041 - 746118
Alignment:
| Q |
40 |
atgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaag |
117 |
Q |
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|||||||||| |||| ||||| |||| | ||||||| ||||||||| ||||| ||| |||||||||||||| ||||| |
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| T |
746041 |
atgaacaattgaggtcatttgttaggtttttggattctaagcttgacgcatgtgatcaaaagatgaatatgcgaaaag |
746118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 77 - 325
Target Start/End: Complemental strand, 51792542 - 51792294
Alignment:
| Q |
77 |
taagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagt |
176 |
Q |
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|||||||||||| || |||| ||||| | |||||||||||| |||||||| ||||||| ||||||||| |||| || ||||| | ||||| |||| ||| |
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| T |
51792542 |
taagcttgatgcttgtaatcaaaagaagcatatgctaaaagaagatcttaagggaaaaacaatagctcatgaatcacacaaggtagataaacttatcagt |
51792443 |
T |
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| Q |
177 |
tctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatatcaatgata |
276 |
Q |
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| T |
51792442 |
actccttccttgaccccaaatccaagttactacttcaatctcatgcaaaattccatgtctcaagcacaaacttatcctccaatgatgaatattagtgata |
51792343 |
T |
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| Q |
277 |
aaaaccctttagggttttggccacttatatcaggacaaagctctcaacc |
325 |
Q |
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||||||| |||||||||||||||||| ||| ||||||||||||||||| |
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| T |
51792342 |
aaaaccccttagggttttggccacttcaatcgggacaaagctctcaacc |
51792294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 268
Target Start/End: Complemental strand, 2450 - 2262
Alignment:
| Q |
77 |
taagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagt |
176 |
Q |
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|||||||||||| || | || |||||| ||||||||||||||| ||| || ||||||| ||||||||| |||| || ||||| ||||||| |||| |||| |
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| T |
2450 |
taagcttgatgcttgtattcaaaagataaatatgctaaaaggatatcataagggaaaagcaatagctcatgaatcacacaaggttgataaacttattagt |
2351 |
T |
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| Q |
177 |
tctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatat |
268 |
Q |
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|||| |||||| |||||||||||||| | ||||||| || ||||| ||||||||||||||| | ||||| ||||||||||| ||||| |
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| T |
2350 |
attcctcacttggcctcaaatccaagtaattgcttcaatttcatgcaa---aacatgtctcaagcagaaatttaacctccattgattaatat |
2262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 268
Target Start/End: Complemental strand, 7961 - 7773
Alignment:
| Q |
77 |
taagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagt |
176 |
Q |
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|||||||||||| || | || |||||| ||||||||||||||| ||| || ||||||| ||||||||| |||| || ||||| ||||||| |||| |||| |
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| T |
7961 |
taagcttgatgcttgtattcaaaagataaatatgctaaaaggatatcataagggaaaagcaatagctcatgaatcacacaaggttgataaacttattagt |
7862 |
T |
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| Q |
177 |
tctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatat |
268 |
Q |
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|||| |||||| |||||||||||||| | ||||||| || ||||| ||||||||||||||| | ||||| ||||||||||| ||||| |
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| T |
7861 |
attcctcacttggcctcaaatccaagtaattgcttcaatttcatgcaa---aacatgtctcaagcagaaatttaacctccattgattaatat |
7773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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