View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_24 (Length: 377)
Name: NF21280_low_24
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 46702768 - 46703121
Alignment:
| Q |
17 |
atattatatctgcagtccatggcagcatggacactgaccaatatcgcggcgggattgtctgagcatacaaatactgtgattgaacatggtgctgttcctc |
116 |
Q |
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| T |
46702768 |
atattatatctgcagtccatggcagcatggacactgaccaatatcgcggcgggattgtctgagcatacaaatactgtgattgaacatggtgctgttcctc |
46702867 |
T |
|
| Q |
117 |
tgcttgtgcagcttctgagctctggttgtgatgacggcaaagaacaggtgatgtcttcttcaatctcttggcataattgcattgagaaaaccattgtgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46702868 |
tgcttgtgcagcttctgagctctggttgtgatgacggcaaagaacaggtgatgtcttcttcaatctcttggcataattgcattgagaaaaccattgtgta |
46702967 |
T |
|
| Q |
217 |
tgcatgtatctatgtatgtgttgatcccttacagaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctggcaattccctg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46702968 |
tgcatgtatctatgtatgtgttgatcccttacagaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctggcaattccctg |
46703067 |
T |
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| Q |
317 |
accgcaagggatcttgttttaaataatggtgcactttctccattattgtctctg |
370 |
Q |
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| T |
46703068 |
accgcaagggatcttgttttaaataatggtgcactttctccattattgtctctg |
46703121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 46123975 - 46124325
Alignment:
| Q |
17 |
atattatatctgcagtccatggcagcatggacactgaccaatatcgcggcgggattgtctgagcatacaaatactgtgattgaacatggtgctgttcctc |
116 |
Q |
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| T |
46123975 |
atattatatctgcagtccatggcagcatggactctgatcaatgtcactgcgggattgtctgaacatacaaatactgtgattgaacatggtgctgttcctc |
46124074 |
T |
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| Q |
117 |
tgcttgtgcagcttctgagctctggttgtgatgacggcaaagaacaggtgatgtcttcttcaatctcttggcataattgcattgagaaaaccattgtgta |
216 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| || ||||| |
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| T |
46124075 |
tgcttgtgaagcttctgagctctggcagtgatgacggcaaagaacaggtgatgtcttcctcaatctcgtggcataattgctttgagaaaactatcgtgta |
46124174 |
T |
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| Q |
217 |
tgcatgtatctatgtatgtgttgatcccttacagaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctggcaattccctg |
316 |
Q |
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|||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46124175 |
tgcatgtatctatgtatgagtcgatcgcttacacaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctggcaattccctg |
46124274 |
T |
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| Q |
317 |
accgcaagggatcttgttttaaataatggtgcactttctccattattgtct |
367 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
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| T |
46124275 |
accgcaagggatattgttttaaatcatggtgcactttctccactattgtct |
46124325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 46129984 - 46130337
Alignment:
| Q |
17 |
atattatatctgcagtccatggcagcatggacactgaccaatatcgcggcgggattgtctgagcatacaaatactgtgattgaacatggtgctgttcctc |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46129984 |
atattatatctgcagtccatggcagcatggactctgatcaatgtcaccgcgggattgtctgagcatacaaatactgtgattgaacatggtgctgttcctc |
46130083 |
T |
|
| Q |
117 |
tgcttgtgcagcttctgagctctggttgtgatgacggcaaagaacaggtgatgtcttcttcaatctcttggcataattgcattgagaaaaccattgtgta |
216 |
Q |
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| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| || ||||| |
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| T |
46130084 |
tccttgtgaagcttctgagctctggtagtgatgacggcaaagaacaggtgatgtcttcctcaatctcgtggcataattgctttgagaaaactatcgtgta |
46130183 |
T |
|
| Q |
217 |
tgcatgtatctatgtatgtgttgatcccttacagaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctggcaattccctg |
316 |
Q |
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|||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
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| T |
46130184 |
tgcatgtatctatgtatgagtcgatcgcttacacaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctggtagttctgag |
46130283 |
T |
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| Q |
317 |
accgcaagggatcttgttttaaataatggtgcactttctccattattgtctctg |
370 |
Q |
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||||| | |||| ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
46130284 |
accgcgaaggatgttgttttaaatcatggtgcacttcctccattattgtctctg |
46130337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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