View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_25 (Length: 339)
Name: NF21280_low_25
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 8946454 - 8946141
Alignment:
| Q |
18 |
tcactcacaggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgagtttgtgcgacaatgttacagaattaatcaaag |
117 |
Q |
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| T |
8946454 |
tcactcacaggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgggtttgtgcgacaatgttacagaattaatcaaag |
8946355 |
T |
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| Q |
118 |
tgaagaacaatattgtggtttgtgacgatggagatattattgaacaatatactaatgtgtatcgagcaaacgttgttggagctgttttcatatcaaatat |
217 |
Q |
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| T |
8946354 |
tgaagaacaatattgtggtttgtgacgatggagatattattgaacaatattcttatgtgtatcaagcaaacgttgttggagctgttttcatatcaaatat |
8946255 |
T |
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| Q |
218 |
atcaaatttcgacttctttagaaaagaagagtatagttttcaagacttaagttatgcaaacatctttatcagtccaatagatggagaaatcaccaaatcg |
317 |
Q |
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| T |
8946254 |
atcaaattttgatttctttagaaaagaagagtatagttttcaagacttaagttatgcaaacatctttattagtccaatagatggagaaatcaccaaatca |
8946155 |
T |
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| Q |
318 |
tacatcaagaataa |
331 |
Q |
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| T |
8946154 |
tacatcaagaataa |
8946141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 8974052 - 8974135
Alignment:
| Q |
38 |
ttatctaggaaatttctctgctagcaatttgccaattgttttcatgagtttgtgcgacaatgttacagaattaatcaaagtgaa |
121 |
Q |
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| T |
8974052 |
ttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaatcaaagtgaa |
8974135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 8962661 - 8962760
Alignment:
| Q |
43 |
taggaaatttctctgctagcaatttgccaattgttttcatgagtttgtgcgacaatgttacagaattaatcaaagtgaagaacaatattgtggtttgtga |
142 |
Q |
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| T |
8962661 |
taggaaacttctctgctagtaatattcccattgttttcaaaggtatgtgtgacaattttacagaactaatcagagtgaagagcgagattgtggtttgtga |
8962760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 9949775 - 9949680
Alignment:
| Q |
47 |
aaatttctctgctagcaatttgccaattgttttcatgagtttgtgcgacaatgttacagaattaatcaaagtgaagaacaatattgtggtttgtga |
142 |
Q |
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| T |
9949775 |
aaatttatctgctaacgatttttcaattgttttcatgagtatgtgtgacaatgttaaagaattaaacaatgtgaatagaaaaattgtgatttgtga |
9949680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 21687602 - 21687478
Alignment:
| Q |
18 |
tcactcacaggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgagtttgtgcgacaatgttacagaattaatcaaag |
117 |
Q |
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|||||||| |||| |||| ||||||||||| |||||||||| |||||| ||||||||||| ||| || |||| |||||||||| |||||||| || || |
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| T |
21687602 |
tcactcactggtttgtctttctatctaggaaacttctctgctaacaattttccaattgtttttatgggtatgtgtgacaatgttaaagaattaaacacag |
21687503 |
T |
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| Q |
118 |
tgaagaacaatattgtggtttgtga |
142 |
Q |
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|||||| || |||||||||||||| |
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| T |
21687502 |
tgaagagaaagattgtggtttgtga |
21687478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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