View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21280_low_3 (Length: 723)

Name: NF21280_low_3
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21280_low_3
NF21280_low_3
[»] chr2 (23 HSPs)
chr2 (20-278)||(11117781-11118037)
chr2 (292-507)||(11118085-11118300)
chr2 (576-710)||(11118393-11118527)
chr2 (289-503)||(11110078-11110292)
chr2 (580-710)||(11110447-11110577)
chr2 (20-191)||(11109317-11109488)
chr2 (306-469)||(11145246-11145409)
chr2 (574-710)||(10793748-10793884)
chr2 (295-469)||(11136936-11137110)
chr2 (306-469)||(11149180-11149343)
chr2 (289-503)||(10793995-10794209)
chr2 (135-194)||(10794279-10794338)
chr2 (306-503)||(11104100-11104297)
chr2 (117-193)||(11192278-11192354)
chr2 (306-469)||(11155563-11155726)
chr2 (607-669)||(11097393-11097455)
chr2 (117-195)||(11145089-11145167)
chr2 (609-673)||(11172382-11172446)
chr2 (504-535)||(11118352-11118383)
chr2 (156-194)||(11148408-11148446)
chr2 (606-652)||(11178531-11178577)
chr2 (154-188)||(11198311-11198345)
chr2 (372-469)||(11177243-11177340)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 11117781 - 11118037
Alignment:
Q  20 aggactacccttctcttcaaatgcacagcttagtccagacttttacgccaaaacatgtccccaattgcaatctattgtgtttaaaatcttagagaaggtt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11117781 aggactacccttctcttcaaatgcacagcttagtccagacttttacgccaaaacatgtccccaattgcaatctattgtgtttcaaatcttagagaaggtt 11117880  T
Q  120 tctaagactgattctcgaatgcctgcgagtatcattaggcttcactttcatgattgtttcgttcaagtatgtatacctattattattcagtcttagaaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11117881 tctaagactgattctcgaatgcctgcgagtatcattaggcttcactttcatgattgtttcgttcaagtatgtatacctattattattcagtcttagaaac 11117980  T
Q  220 caagttattatttttcactttgtatttatatgataatgaaaaataatcggtagttcata 278  Q
    ||||||||| ||||||||||||| ||  |||||||||||||||||||| ||||||||||    
T  11117981 caagttattgtttttcactttgtgtt--tatgataatgaaaaataatcagtagttcata 11118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 292 - 507
Target Start/End: Original strand, 11118085 - 11118300
Alignment:
Q  292 atttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaag 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118085 atttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaag 11118184  T
Q  392 aagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagtatct 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118185 aagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagtatct 11118284  T
Q  492 tcagttctggtaaata 507  Q
    ||||||||||||||||    
T  11118285 tcagttctggtaaata 11118300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 576 - 710
Target Start/End: Original strand, 11118393 - 11118527
Alignment:
Q  576 tattcacagagtgggggtccaggttggatcgttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtccca 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118393 tattcacagagtgggggtccaggttggatcgttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtccca 11118492  T
Q  676 gctccagtctagatcaacttaaatcttcctttgct 710  Q
    |||||||||||||||||||||||||||||||||||    
T  11118493 gctccagtctagatcaacttaaatcttcctttgct 11118527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 289 - 503
Target Start/End: Original strand, 11110078 - 11110292
Alignment:
Q  289 attatttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactcctt 388  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||  | ||||||| ||||||||||||||||  ||||||||| ||||||||    
T  11110078 attatttatgattgaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactcctt 11110177  T
Q  389 aagaagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagta 488  Q
    |||| ||||||||||||||||||| || || ||| | |||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||  ||||| ||    
T  11110178 aagaggattggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcgtctggaata 11110277  T
Q  489 tcttcagttctggta 503  Q
    ||||| |||||||||    
T  11110278 tcttctgttctggta 11110292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 580 - 710
Target Start/End: Original strand, 11110447 - 11110577
Alignment:
Q  580 cacagagtgggggtccaggttggatcgttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtcccagctc 679  Q
    |||||| ||||||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||     
T  11110447 cacagactgggggtccaggttgggaggttccactaggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttccaggtcccaactt 11110546  T
Q  680 cagtctagatcaacttaaatcttcctttgct 710  Q
    ||||||||||| |||||||||| ||||||||    
T  11110547 cagtctagatcgacttaaatctgcctttgct 11110577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 11109317 - 11109488
Alignment:
Q  20 aggactacccttctcttcaaatgcacagcttagtccagacttttacgccaaaacatgtccccaattgcaatctattgtgtttaaaatcttagagaaggtt 119  Q
    ||||||||||||||||||||||||||| |||  |||| ||||||| | |||||| |||||| ||||||| ||||| |  |||||| ||||   ||| |||    
T  11109317 aggactacccttctcttcaaatgcacaacttgatccatacttttatggcaaaacttgtcccaaattgcattctatagcatttaaagtcttgcggaaagtt 11109416  T
Q  120 tctaagactgattctcgaatgcctgcgagtatcattaggcttcactttcatgattgtttcgttcaagtatgt 191  Q
     ||||||| ||| | ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||    
T  11109417 gctaagacggatccccgaatgcctgccagtatcatcaggcttcattttcatgattgtttcgttcaagtatgt 11109488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 306 - 469
Target Start/End: Original strand, 11145246 - 11145409
Alignment:
Q  306 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 405  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||  |||||||||||||||  |||||| | |||||| || ||| | |||||||||     
T  11145246 cagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgttg 11145345  T
Q  406 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 469  Q
    | ||||| || ||||| |  || ||||| | ||| ||||| | |||||||||||||||||||||    
T  11145346 tgaatcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattct 11145409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 574 - 710
Target Start/End: Complemental strand, 10793884 - 10793748
Alignment:
Q  574 tatattcacagagtgggggtccaggttggatcgttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtcc 673  Q
    ||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| || |||  |||||||||||  ||    
T  10793884 tatattcacagagtaaaggtcccggttggatcgttccattgggaagaagggatagtctaacagcaaatcgaaccctcgcaaatcaaaatcttccagcccc 10793785  T
Q  674 cagctccagtctagatcaacttaaatcttcctttgct 710  Q
       || || ||||  ||||||||||||||||||||||    
T  10793784 tttcttcaatctaagtcaacttaaatcttcctttgct 10793748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 295 - 469
Target Start/End: Original strand, 11136936 - 11137110
Alignment:
Q  295 tatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaag 394  Q
    |||||||| | ||||||||||||||||||||||| ||||| ||||||  ||| |||| |||||||||||| |||   |||||||| |||||  || || |    
T  11136936 tatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgagg 11137035  T
Q  395 attggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 469  Q
     ||||||||| | ||||| || ||||| |  |||||||| | ||||||||| | |||||||||||||||||||||    
T  11137036 tttggatgttgtgaatcaaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattct 11137110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 306 - 469
Target Start/End: Original strand, 11149180 - 11149343
Alignment:
Q  306 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 405  Q
    |||||||||||||||||||||||  |||| ||||||  |||  ||| ||||||||||||||||  |||||| | |||||| |||||| | || ||||||     
T  11149180 cagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgttg 11149279  T
Q  406 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 469  Q
    | ||||| || ||||| |  |||||||| | ||||||||| | ||||||||| |||||||||||    
T  11149280 tgaatcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattct 11149343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 289 - 503
Target Start/End: Complemental strand, 10794209 - 10793995
Alignment:
Q  289 attatttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactcctt 388  Q
    |||||| || |||||| |||||||| ||||||||  ||||| |||| || ||| ||||||| | ||| |||| | | |||   |||||||| |||||| |    
T  10794209 attattaattattgaaacagggttgcgatgcatccattttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccat 10794110  T
Q  389 aagaagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagta 488  Q
    |||| | ||| | ||| | ||||  || || || || |||||||||| ||| ||||||| |||||||||||||||||||||  ||||||| ||| || ||    
T  10794109 aagaggtttgcaagttgtgaatcgtatcaagacagacgtggaaaaagcttgccctaatacagtttcttgtgctgatattcttgcacttgctgctagaata 10794010  T
Q  489 tcttcagttctggta 503  Q
    ||||| || ||||||    
T  10794009 tcttccgtcctggta 10793995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 10794338 - 10794279
Alignment:
Q  135 cgaatgcctgcgagtatcattaggcttcactttcatgattgtttcgttcaagtatgtata 194  Q
    ||||||||||||| | | || ||||||||||||||||||||||||||||||||| |||||    
T  10794338 cgaatgcctgcgattctaatcaggcttcactttcatgattgtttcgttcaagtaagtata 10794279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 503
Target Start/End: Original strand, 11104100 - 11104297
Alignment:
Q  306 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 405  Q
    ||||| ||||||| ||||||||||||||| || |||  ||| |||| |||||||||||||||   |||||| | |||||| ||||   | |||||||||     
T  11104100 cagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaaagcgtttggatgttg 11104199  T
Q  406 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagtatcttcagttctggta 503  Q
    | ||| | || || || |  || ||| |||  |||||||| |  |||||||||||||||||||| ||  ||||||||| |||||||||  ||||||||    
T  11104200 tgaataaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggta 11104297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 11192354 - 11192278
Alignment:
Q  117 gtttctaagactgattctcgaatgcctgcgagtatcattaggcttcactttcatgattgtttcgttcaagtatgtat 193  Q
    |||||| |||| ||| |||| || | ||| ||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  11192354 gtttctcagacagatcctcgtatccttgccagtttcattaggcttcattttcatgattgttttgttcaagtatgtat 11192278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 306 - 469
Target Start/End: Original strand, 11155563 - 11155726
Alignment:
Q  306 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 405  Q
    ||||| |||||||| || ||||||||||| || ||| |||| || |  || |||||| | |||  ||||||||  ||||| |||||| | |||||||||     
T  11155563 cagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttg 11155662  T
Q  406 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 469  Q
    | |||||||| |||||||   | ||||  | ||||||||| | |||||||||||||||||||||    
T  11155663 taaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattct 11155726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 669
Target Start/End: Original strand, 11097393 - 11097455
Alignment:
Q  607 ttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccag 669  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||| |||  ||| |||||||    
T  11097393 ttccattgggaagaagggatagtttaacagcaaaccaagcccttgcaaatcaaaaccttccag 11097455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 11145089 - 11145167
Alignment:
Q  117 gtttctaagactgattctcgaatgcctgcgagtatcattaggcttcactttcatgattgtttcgttcaagtatgtatac 195  Q
    ||||||||||| ||| |||| |||| ||| ||| |  ||||||||||||| ||||| ||||| ||||||||||||||||    
T  11145089 gtttctaagacagatactcgtatgcttgcaagtcttgttaggcttcacttccatgactgttttgttcaagtatgtatac 11145167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 673
Target Start/End: Original strand, 11172382 - 11172446
Alignment:
Q  609 ccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtcc 673  Q
    ||||| |||||||| |||||| |||||||||||| | ||||||| |||| |||||||||| ||||    
T  11172382 ccattaggaagaagagatagtttaacagcaaatctaacccttgctaatataaatcttccaagtcc 11172446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 535
Target Start/End: Original strand, 11118352 - 11118383
Alignment:
Q  504 aataatggttgaatcaacttcttttatttatt 535  Q
    ||||||||||||||||||||||||||||||||    
T  11118352 aataatggttgaatcaacttcttttatttatt 11118383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 11148408 - 11148446
Alignment:
Q  156 aggcttcactttcatgattgtttcgttcaagtatgtata 194  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  11148408 aggcttcactttcatgactgttttgttcaagtatgtata 11148446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 606 - 652
Target Start/End: Original strand, 11178531 - 11178577
Alignment:
Q  606 gttccattgggaagaagggatagtctaacagcaaatcaatcccttgc 652  Q
    |||||||| ||||||||||||||| ||||||||||| | ||||||||    
T  11178531 gttccattaggaagaagggatagtttaacagcaaataattcccttgc 11178577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 11198311 - 11198345
Alignment:
Q  154 ttaggcttcactttcatgattgtttcgttcaagta 188  Q
    ||||||||||||||||||||||||| |||||||||    
T  11198311 ttaggcttcactttcatgattgttttgttcaagta 11198345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 469
Target Start/End: Original strand, 11177243 - 11177340
Alignment:
Q  372 ccaaatataaactccttaagaagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 469  Q
    |||||||  |||||| ||||| | ||||| || || || ||||| ||||| | ||||||||| | ||||||||| |  ||||||||||||||||||||    
T  11177243 ccaaataacaactccataagaggtttggacgtgataaaccagatcaaaacagcggtggaaaatgcttgtcctaacactgtttcttgtgctgatattct 11177340  T

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