View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_35 (Length: 248)
Name: NF21280_low_35
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_35 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 43703870 - 43704101
Alignment:
| Q |
1 |
tgggttgttttttaattttcttcacttgataactgcagcaatttttgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43703870 |
tgggttgttttttaattttcttcacttgataactgcagcaatttttgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcat |
43703969 |
T |
|
| Q |
101 |
ggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43703970 |
ggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattaca |
43704069 |
T |
|
| Q |
201 |
aagagtttccaaagagtatgtctagtgttgct |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
43704070 |
aagagtttccaaagagtatgtctagtgttgct |
43704101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 43714841 - 43715072
Alignment:
| Q |
1 |
tgggttgttttttaattttcttcacttgataactgcagcaatttttgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714841 |
tgggttgttttttaattttcttcacttgataactgcagcaatttttgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcat |
43714940 |
T |
|
| Q |
101 |
ggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714941 |
ggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattaca |
43715040 |
T |
|
| Q |
201 |
aagagtttccaaagagtatgtctagtgttgct |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
43715041 |
aagagtttccaaagagtatgtctagtgttgct |
43715072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43687012 - 43687247
Alignment:
| Q |
1 |
tgggttgttttttaattttcttcacttgataactgcagcaatttttgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcat |
100 |
Q |
| |
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||||||||||||||||||||||||| | || ||||||||||||||||| | ||||||||||| ||||||| | | ||||| ||||||| |||||||| |
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| T |
43687012 |
tgggttgttttttaattttcttcacattgtagttgcagcaatttttgagagtataaggagaaagaaagcaatacaggcaggatttttgaataatactcat |
43687111 |
T |
|
| Q |
101 |
ggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattaca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |
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| T |
43687112 |
ggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagctgaagcattcaatgttattggccaaaatgagttttattaca |
43687211 |
T |
|
| Q |
201 |
aagagtttccaaagagtatgtctagtgttgcttctg |
236 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||| |
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| T |
43687212 |
aagagtttccaaagactatgtctagtgtttcttctg |
43687247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43728575 - 43728800
Alignment:
| Q |
1 |
tgggttgttttttaattttcttcacttgataactgcagcaatttttgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcat |
100 |
Q |
| |
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|||||||||||| |||||||| |||||| |||||||||| |||||||| | |||||||||| ||||||| | | ||||| |||||||||||||||| |
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| T |
43728575 |
tgggttgtttttaaattttctccacttggtaactgcagctgcttttgagagtataaggagaaaaaaagcaattcaggcaggatttttgaatgatactcat |
43728674 |
T |
|
| Q |
101 |
ggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattaca |
200 |
Q |
| |
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|| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||| ||||| || ||||||| |
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| T |
43728675 |
ggcgtgttgaaaatgtctgcattgtggcttgcacctcaactttgtttgggtggtataagcgaagcattcaatgctattggccaaaatgaattctattaca |
43728774 |
T |
|
| Q |
201 |
aagagtttccaaagagtatgtctagt |
226 |
Q |
| |
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|||||||||| | || |||||||||| |
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| T |
43728775 |
aagagtttccgaggactatgtctagt |
43728800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 25274045 - 25274174
Alignment:
| Q |
99 |
atggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttatta |
198 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||||||||||||| | ||||||||| | ||| ||||| | || ||||| |||||||||||||| |
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| T |
25274045 |
atggagtgttggaaatgtcggcattgtggcttgcacctcaactttgtctagctggtatatctgaagcagtcaatttcataggccaaaatgagttttatta |
25274144 |
T |
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| Q |
199 |
caaagagtttccaaagagtatgtctagtgt |
228 |
Q |
| |
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|| ||||||||||| | |||||||||||| |
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| T |
25274145 |
cacagagtttccaagtactatgtctagtgt |
25274174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 2690627 - 2690833
Alignment:
| Q |
16 |
ttttcttcacttgataactgcagcaatttttgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcatggagtgttgaaaatg |
115 |
Q |
| |
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|||||| |||||| |||| ||| ||||| | |||||| ||||| ||| ||||||||| ||||||||| |||||| ||||| ||||||||| ||| |
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| T |
2690627 |
ttttctccacttggtaaccgcatcaattgtcgagactataaggcgaagaagagcaatcaatgaaggatatggtaatgatcctcattcagtgttgaacatg |
2690726 |
T |
|
| Q |
116 |
tctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattacaaagagtttccaaaga |
215 |
Q |
| |
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||||||||||||||| ||||||||||| |||| ||| ||||| ||| ||||||||||| ||||| |||||||| || |||| || ||||| |||| |
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| T |
2690727 |
tctgcaatgtggctttttcctcaactttgcttgggtggaatagctgaagcattcaatgttataggccaaaatgagttctactacaccgaatttcccaaga |
2690826 |
T |
|
| Q |
216 |
gtatgtc |
222 |
Q |
| |
|
|||||| |
|
|
| T |
2690827 |
ctatgtc |
2690833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 23683 - 23554
Alignment:
| Q |
99 |
atggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttatta |
198 |
Q |
| |
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||||||| ||| |||| || ||| ||||||||||||||||||| ||| ||||||||||| | ||| |||| | || ||||| |||||||||||||| |
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| T |
23683 |
atggagttttggaaatttcggcattgtggcttgcacctcaactctgtctggctggtatatctgaagcagtcaaattcataggccaaaatgagttttatta |
23584 |
T |
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| Q |
199 |
caaagagtttccaaagagtatgtctagtgt |
228 |
Q |
| |
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|| ||||||||||| | |||||||||||| |
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| T |
23583 |
cacagagtttccaagtactatgtctagtgt |
23554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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