View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_39 (Length: 225)
Name: NF21280_low_39
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_39 |
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| [»] scaffold1678 (1 HSPs) |
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| [»] scaffold0786 (1 HSPs) |
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| [»] scaffold0390 (2 HSPs) |
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Alignment Details
Target: scaffold1678 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold1678
Description:
Target: scaffold1678; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 1265 - 1066
Alignment:
| Q |
18 |
atttgttaagtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1265 |
atttgttaagtcaaataaatcaatggtgtaaaatataaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacaca |
1166 |
T |
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| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggggaaataaaaatcagaataatctacc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
1165 |
caaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggggaaataaaaatcagaacaatatacc |
1066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 3235 - 3424
Alignment:
| Q |
18 |
atttgttaagtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacaca |
117 |
Q |
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||||||||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3235 |
atttgttaagtcaaataaaccaatggcggaaaatcaaaatatgagcaagtgtttctcattccaaatataacaaactccataattagttaattaccacaca |
3334 |
T |
|
| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggggaaataaaaatcaga |
207 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
3335 |
caaacgattggaccaagattattgcatgctcctatataagtcttggtagtatcacattgtttttcatcacaaagggaaataaaaatcaga |
3424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 22139497 - 22139308
Alignment:
| Q |
18 |
atttgttaagtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacaca |
117 |
Q |
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||||||||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22139497 |
atttgttaagtcaaataaaccaatggcggaaaatcaaaatatgagcaagtgtttctcattccaaatataacaaactccataattagttaattaccacaca |
22139398 |
T |
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| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggggaaataaaaatcaga |
207 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
22139397 |
caaacgattggaccaagattattgcatgctcctatataagtcttggtagtatcacattgtttttcatcacaaagggaaataaaaatcaga |
22139308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 32241632 - 32241444
Alignment:
| Q |
18 |
atttgttaagtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacaca |
117 |
Q |
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|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32241632 |
atttgttaagtcaaataaaccaatggtgaaaaatcaaaatatgagcaagtctttctcattccaaatataacaaactccataattagttaattaccacaca |
32241533 |
T |
|
| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggggaaataaaaatcagaa |
208 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||| ||||||| ||||||| ||||||| |
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| T |
32241532 |
caaacgattggaccaagattattgcatgctcctatataag--ttggtagtatcacattgtttttcatcacaagggaaaataaagatcagaa |
32241444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 32294975 - 32295159
Alignment:
| Q |
18 |
atttgttaagtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacaca |
117 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
32294975 |
atttgttaagtcaaataaaccaatggttgaaactcaaaatatgagcaagtctttctcattccaaatataacaaaatccataattagttaattaccacaca |
32295074 |
T |
|
| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggggaaataaaaa |
202 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||| ||| |||| ||||||||||||| |||||||||||| |||| |
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| T |
32295075 |
caaacgattggaccaagattattgcatgctcctatataagacttggtaatatcccattgtttttcatcacaaggggaaatcaaaa |
32295159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 24433988 - 24433805
Alignment:
| Q |
18 |
atttgttaagtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacaca |
117 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||||||||||| ||||||| |||| || ||||| ||||||||||||| ||||||||||||||| |
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| T |
24433988 |
atttgttaagtcaaataaaccattggtggaaaatcaaaatatgagcaaatctttctgattctaaatataaaaaactccataatttgttaattaccacaca |
24433889 |
T |
|
| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggggaaataaaaatcagaa |
208 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24433888 |
caaacgattggaccaagattattgca-------atataagtcttggtagtatcacattgtttttcatcacaaggggaaataaaaatcagaa |
24433805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 32276212 - 32276303
Alignment:
| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataa-gactttgtagtatcacattgtttttcattacaaggggaaataaaaatcagaa |
208 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
32276212 |
caaacgattggatcaaggctcttgcatgctcctatataaagacttggtagtatcacattgtttttcatcacaaggggaaataaaaagcagaa |
32276303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 32302743 - 32302828
Alignment:
| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataa-gactttgtagtatcacattgtttttcattacaaggggaaataaaaa |
202 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| ||||| |||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
32302743 |
caaacgattggaccaaagctcttgcatgctcctatataaagacttggtagtatcccattgtttttcatcacaaggggaaataaaaa |
32302828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 1767 - 1956
Alignment:
| Q |
18 |
atttgttaagtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacaca |
117 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1767 |
atttgttaagtcaaataaaccaatggcggaaaatcaaaatatgagcaaatgtttctcattccaaatataacaaactccataattagttaattaccacaca |
1866 |
T |
|
| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggggaaataaaaatcaga |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
1867 |
caaacgattggaccaagattattgcatgctcctatataagtcttggtagtatcacattgtttttcatcacaaagggaaataaaaatcaga |
1956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 14751 - 14940
Alignment:
| Q |
18 |
atttgttaagtcaaataaatcaatggtgtaaaatcaaaatatgagcaagtctttctcattccaattataacaaactccataattagttaattaccacaca |
117 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
14751 |
atttgttaagtcaaataaacgaatggcggaaaatcaaaatatgagcaagtgtttctcattccaaatataacaaaatccataattagttaattaccacaca |
14850 |
T |
|
| Q |
118 |
caaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggggaaataaaaatcaga |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||| ||||||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
14851 |
caaacgattggaccaagattattgcatgctcctatataagtcttggtagtatgacattgtttttcatcacaaagggaaataaaaatcaga |
14940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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