View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_40 (Length: 221)
Name: NF21280_low_40
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_40 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 43703915 - 43704101
Alignment:
| Q |
19 |
tgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcatggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgt |
118 |
Q |
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| T |
43703915 |
tgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcatggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgt |
43704014 |
T |
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| Q |
119 |
ttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattacaaagagtttccaaagagtatgtctagtgttgct |
205 |
Q |
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| T |
43704015 |
ttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattacaaagagtttccaaagagtatgtctagtgttgct |
43704101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 43714886 - 43715072
Alignment:
| Q |
19 |
tgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcatggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgt |
118 |
Q |
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| T |
43714886 |
tgagactgtaaggagaaaggaagcaatcaaagaaggatatttgaatgatactcatggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgt |
43714985 |
T |
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| Q |
119 |
ttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattacaaagagtttccaaagagtatgtctagtgttgct |
205 |
Q |
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| T |
43714986 |
ttggctggtatagcagaaatgttcaatgttattggccagaatgagttttattacaaagagtttccaaagagtatgtctagtgttgct |
43715072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 43687065 - 43687247
Alignment:
| Q |
27 |
taaggagaaaggaagcaatcaaagaaggatatttgaatgatactcatggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctgg |
126 |
Q |
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| T |
43687065 |
taaggagaaagaaagcaatacaggcaggatttttgaataatactcatggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctgg |
43687164 |
T |
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| Q |
127 |
tatagcagaaatgttcaatgttattggccagaatgagttttattacaaagagtttccaaagagtatgtctagtgttgcttctg |
209 |
Q |
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| T |
43687165 |
tatagctgaagcattcaatgttattggccaaaatgagttttattacaaagagtttccaaagactatgtctagtgtttcttctg |
43687247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 43728628 - 43728800
Alignment:
| Q |
27 |
taaggagaaaggaagcaatcaaagaaggatatttgaatgatactcatggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctgg |
126 |
Q |
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| T |
43728628 |
taaggagaaaaaaagcaattcaggcaggatttttgaatgatactcatggcgtgttgaaaatgtctgcattgtggcttgcacctcaactttgtttgggtgg |
43728727 |
T |
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| Q |
127 |
tatagcagaaatgttcaatgttattggccagaatgagttttattacaaagagtttccaaagagtatgtctagt |
199 |
Q |
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| T |
43728728 |
tataagcgaagcattcaatgctattggccaaaatgaattctattacaaagagtttccgaggactatgtctagt |
43728800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 25274045 - 25274174
Alignment:
| Q |
72 |
atggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttatta |
171 |
Q |
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| T |
25274045 |
atggagtgttggaaatgtcggcattgtggcttgcacctcaactttgtctagctggtatatctgaagcagtcaatttcataggccaaaatgagttttatta |
25274144 |
T |
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| Q |
172 |
caaagagtttccaaagagtatgtctagtgt |
201 |
Q |
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| T |
25274145 |
cacagagtttccaagtactatgtctagtgt |
25274174 |
T |
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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 2690678 - 2690833
Alignment:
| Q |
40 |
agcaatcaaagaaggatatttgaatgatactcatggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatg |
139 |
Q |
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| T |
2690678 |
agcaatcaatgaaggatatggtaatgatcctcattcagtgttgaacatgtctgcaatgtggctttttcctcaactttgcttgggtggaatagctgaagca |
2690777 |
T |
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| Q |
140 |
ttcaatgttattggccagaatgagttttattacaaagagtttccaaagagtatgtc |
195 |
Q |
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| T |
2690778 |
ttcaatgttataggccaaaatgagttctactacaccgaatttcccaagactatgtc |
2690833 |
T |
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Target: scaffold0236 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 23683 - 23554
Alignment:
| Q |
72 |
atggagtgttgaaaatgtctgcaatgtggcttgcacctcaactttgtttggctggtatagcagaaatgttcaatgttattggccagaatgagttttatta |
171 |
Q |
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| T |
23683 |
atggagttttggaaatttcggcattgtggcttgcacctcaactctgtctggctggtatatctgaagcagtcaaattcataggccaaaatgagttttatta |
23584 |
T |
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| Q |
172 |
caaagagtttccaaagagtatgtctagtgt |
201 |
Q |
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| T |
23583 |
cacagagtttccaagtactatgtctagtgt |
23554 |
T |
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