View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21280_low_5 (Length: 645)

Name: NF21280_low_5
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21280_low_5
NF21280_low_5
[»] chr4 (1 HSPs)
chr4 (1-630)||(21444822-21445439)


Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Complemental strand, 21445439 - 21444822
Alignment:
Q  1 agatgatgactatgagttaaagaccaagcttgatgttgtggagcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttaga 100  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21445439 agatgatgattacgagttaaagaccaagcttgatgttgtggagcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttaga 21445340  T
Q  101 actagaagtgagccggtgccaatagcggtgccaatagcagtggcatctcaagaacccttttgcgcttatccttcgttacttgctgaaaagagtgagaaga 200  Q
    ||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21445339 actagaagtgagccggtgccaatagc------------agtggcatctcaagaacccttttgcgcttatccttcgttacttgcagaaaagagtgagaaga 21445252  T
Q  201 aactatcatcaaatggtagagccaaattaagaaaacgttctcttagtattcctgcattaggaaagcatagttcagctgatccaatcctttctggtgctcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21445251 aactatcatcaaatggtagagccaaattaagaaaacgttctcttagtattcctgcattaggaaagcatagttcagctgatccaatcctttctggtgctcc 21445152  T
Q  301 tcaaaggtagtagggtattctctctttaatacaattatcacaaccaaacagaatttggnnnnnnnggtagctttttcaataagctgtattacaaattaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  21445151 tcaaaggtagtagggtattctctctttaatacaattatcacaaccaaacagaatttggtttttttggtagctttttcaataagctgtattacaaattaca 21445052  T
Q  401 atgtcctgcatgtaaatactaaagtgaccaaaacttttttagatttctagggtcaaggtcaactttaaggtatcgtttttgcatgaataatatccaaaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21445051 atgtcctgcatgtaaatactaaagtgaccaaaacttttttagatttctagggtcaaggtcaactttaaggtatcgtttttgcatgaataatatccaaaaa 21444952  T
Q  501 atatatcttattgttatactggtttccattttggtttttgctttgttctaaagaatatataatttagacacattatggtttcaacattatttgacaattt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21444951 atatatcttattgttatactggtttccattttggtttttgctttgttctaaagaatatataatttagacacattatggtttcatcattatttgacaattt 21444852  T
Q  601 tgtttctgacttgcactcaccatatcattg 630  Q
    ||||||||||||||||||||||||||||||    
T  21444851 tgtttctgacttgcactcaccatatcattg 21444822  T

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