View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21280_low_7 (Length: 642)

Name: NF21280_low_7
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21280_low_7
NF21280_low_7
[»] chr4 (9 HSPs)
chr4 (18-626)||(54004332-54004932)
chr4 (214-626)||(53988594-53988995)
chr4 (528-605)||(8418258-8418336)
chr4 (525-601)||(17467935-17468012)
chr4 (526-579)||(24177997-24178050)
chr4 (525-609)||(28495428-28495513)
chr4 (534-571)||(47109766-47109803)
chr4 (524-583)||(30191759-30191819)
chr4 (524-571)||(52181130-52181178)
[»] chr3 (7 HSPs)
chr3 (524-609)||(29383057-29383143)
chr3 (525-609)||(16776795-16776880)
chr3 (525-571)||(15095242-15095289)
chr3 (524-605)||(20113325-20113408)
chr3 (524-601)||(12918754-12918832)
chr3 (524-609)||(35938408-35938490)
chr3 (524-571)||(27646252-27646300)
[»] chr5 (6 HSPs)
chr5 (524-609)||(26699360-26699445)
chr5 (524-609)||(26969093-26969178)
chr5 (524-605)||(30117156-30117238)
chr5 (525-606)||(37700137-37700219)
chr5 (524-571)||(39971057-39971105)
chr5 (524-579)||(33819253-33819309)
[»] chr1 (8 HSPs)
chr1 (524-609)||(5966616-5966702)
chr1 (524-602)||(50074453-50074532)
chr1 (524-609)||(26768428-26768514)
chr1 (545-609)||(15624804-15624868)
chr1 (524-601)||(4389652-4389730)
chr1 (527-579)||(35693108-35693161)
chr1 (545-579)||(4371702-4371736)
chr1 (524-609)||(46083910-46083995)
[»] scaffold0280 (1 HSPs)
scaffold0280 (544-609)||(270-335)
[»] chr2 (8 HSPs)
chr2 (525-609)||(4897651-4897736)
chr2 (525-609)||(4945045-4945130)
chr2 (525-609)||(12296337-12296422)
chr2 (524-605)||(12969554-12969636)
chr2 (545-609)||(27725601-27725665)
chr2 (546-601)||(21522929-21522984)
chr2 (544-579)||(26273494-26273529)
chr2 (551-604)||(14493726-14493779)
[»] chr7 (7 HSPs)
chr7 (546-609)||(28017009-28017072)
chr7 (524-609)||(18312232-18312318)
chr7 (525-574)||(20307481-20307530)
chr7 (524-601)||(30534748-30534826)
chr7 (524-601)||(32964311-32964389)
chr7 (524-578)||(47534843-47534897)
chr7 (525-605)||(2087201-2087282)
[»] chr8 (4 HSPs)
chr8 (524-605)||(30734688-30734770)
chr8 (530-609)||(24260862-24260942)
chr8 (544-609)||(30512831-30512897)
chr8 (544-579)||(19701167-19701202)
[»] scaffold0074 (1 HSPs)
scaffold0074 (545-600)||(55993-56048)
[»] chr6 (4 HSPs)
chr6 (546-609)||(8646113-8646176)
chr6 (524-601)||(6418568-6418646)
chr6 (524-571)||(2365039-2365087)
chr6 (545-601)||(2665640-2665696)
[»] scaffold0072 (1 HSPs)
scaffold0072 (551-601)||(47226-47276)
[»] scaffold0294 (1 HSPs)
scaffold0294 (524-579)||(11597-11653)


Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 54004332 - 54004932
Alignment:
Q  18 gatggaaaaccagagccggagggttgaggagaaagaagaggagcatacaaaaaagtatcagacttaagataatccaaaaacttcttcaccaatggtttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004332 gatggaaaaccagagccggagggttgaggagaaagaagaggagcatacaaaaaagtatcagacttaagataatccaaaaacttcttcaccaatggtttct 54004431  T
Q  118 ttccgctgcgcttaattggtttcttgttttgaactcttaaacgatgatttctgttatccattttcttcaatttctttgaatccgaccaaaatgcacaaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  54004432 ttccgctgcgcttaattggtttcttgttttgaactcttaaacgatgatttctgttatccattttcttctttttctttgaatccgaccaaaatgcacaaga 54004531  T
Q  218 tttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtttacaaacgacacacgtgtccgttttgaggtaaccgctact 317  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54004532 tttggagaagtctaggaaaaaggtatggacaaagttgttttgtttgttttgttggcggtttacaaacgacacacgtgtccgttttgaggttaccgctact 54004631  T
Q  318 gtcacgtgtcaaattcgttttctgaatacccatgcccatgcccatgcatgcagcccaatcagccatgtttggtgcttattactttcctgacccccttctt 417  Q
    |||||||||||||||| |||||||||||            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54004632 gtcacgtgtcaaattcattttctgaata------------cccatgcatgcagcccaatcggccatgtttggtgcttattactttcctgacccccttctt 54004719  T
Q  418 tgctcacagaccctccagatttttcgaacagtta-ttattannnnnnnacaaaa-agggcaaaagtccatcaaacagttctttaaatataagtccatttt 515  Q
    |||||||||||||||||||||||||||||||||| || ||        |||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  54004720 tgctcacagaccctccagatttttcgaacagttattttttttttttttacaaaagagggcaaaagtgcatcaaacagttctttaaatataaatccatttt 54004819  T
Q  516 -nnnnnnngtttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatctttaccg 613  Q
            |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54004820 aaaaaaaagtttgtctctttttacaatattcttttgatattttcaagtacattaattaattatttattaatattctcctatttattttatatctttaccg 54004919  T
Q  614 acatgcccctttg 626  Q
    |||||||| ||||    
T  54004920 acatgcccttttg 54004932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 214 - 626
Target Start/End: Complemental strand, 53988995 - 53988594
Alignment:
Q  214 aagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtttacaaacgacacacgtgtccgttttgaggtaaccgc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  53988995 aagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtttacaaacg--acacgtgtccgttttgaggttaccgc 53988898  T
Q  314 tactgtcacgtgtcaaattcgttttctgaatacccatgcccatgcccatgcatgcagcccaatcagccatgtttggtgcttattactttcctgaccccct 413  Q
    |||||||||||||||||||| |||||||||||            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53988897 tactgtcacgtgtcaaattcattttctgaata------------cccatgcatgcagcccaatcggccatgtttggtgcttattactttcctgaccccct 53988810  T
Q  414 tctttgctcacagaccctccagatttttcgaacagttattattannnnnnnacaaaa-agggcaaaagtccatcaaacagttctttaaatataagtccat 512  Q
    ||||||||||||||||||||||||||||||||||||||||  |        |||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  53988809 tctttgctcacagaccctccagatttttcgaacagttatttgtttttttttacaaaagaggacaaaagtgcatcaaacagttctttaaatataagtccat 53988710  T
Q  513 ttt-nnnnnnngtttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttta 610  Q
    |||        |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53988709 tttaaaaaaaagtttgtctctttttacaatatccttttgatattttcaagcacattaattaattatttatcaatattctcctatttattttatatcttta 53988610  T
Q  611 ccgacatgcccctttg 626  Q
    ||||||||||||||||    
T  53988609 ccgacatgcccctttg 53988594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 605
Target Start/End: Complemental strand, 8418336 - 8418258
Alignment:
Q  528 tctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 605  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||||| |||| ||| || | ||||||||||||||||    
T  8418336 tctctttttataagatccatttggtattttcaagtacattaattaattctttaccaacatacccctatttattttatat 8418258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 601
Target Start/End: Original strand, 17467935 - 17468012
Alignment:
Q  525 ttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 601  Q
    ||||| ||||||| ||||||| |||| ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  17467935 ttgtccctttttataagatccctttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 17468012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 579
Target Start/End: Complemental strand, 24178050 - 24177997
Alignment:
Q  526 tgtctctttttacaagatcctttgatattttcaagtacattaattaattattta 579  Q
    |||| ||||||| |||| | |||||||||||||||| ||||||||| |||||||    
T  24178050 tgtccctttttataagaccttttgatattttcaagtgcattaattatttattta 24177997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 609
Target Start/End: Original strand, 28495428 - 28495513
Alignment:
Q  525 ttgtctctttttacaagatcctt-tgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    ||||| ||||||| ||||||| | || ||||| ||||| ||||||||| ||||||| ||| || | ||||||||||||| ||||||    
T  28495428 ttgtccctttttataagatccatctggtatttccaagttcattaattatttatttaccaacatacccctatttattttacatcttt 28495513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 571
Target Start/End: Complemental strand, 47109803 - 47109766
Alignment:
Q  534 tttacaagatcctttgatattttcaagtacattaatta 571  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  47109803 tttataagatcctttggtattttcaagtacattaatta 47109766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 583
Target Start/End: Original strand, 30191759 - 30191819
Alignment:
Q  524 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaa 583  Q
    ||||||| |||||| |||| || ||||||||||  ||||||||||||||||| ||||||||    
T  30191759 tttgtctttttttataagactcatttgatatttcgaagtacattaattaattctttatcaa 30191819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 571
Target Start/End: Complemental strand, 52181178 - 52181130
Alignment:
Q  524 tttgtctctttttacaaga-tcctttgatattttcaagtacattaatta 571  Q
    |||||| ||||||| |||| ||||||||||||| |||||||||||||||    
T  52181178 tttgtccctttttataagactcctttgatatttccaagtacattaatta 52181130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 524 - 609
Target Start/End: Original strand, 29383057 - 29383143
Alignment:
Q  524 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||| || | | ||||||||||||||||||    
T  29383057 tttgtctctttttataagatccctttgatattttcaagtacattaattaattctttaccaacatacccttatttattttatatcttt 29383143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 525 - 609
Target Start/End: Complemental strand, 16776880 - 16776795
Alignment:
Q  525 ttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    ||||||||||||| |||| || |||| ||||| |||||||||||||||||| |||| |||||| | ||||||||||||||||||||    
T  16776880 ttgtctctttttataagacccctttgctatttccaagtacattaattaattctttaccaatatacccctatttattttatatcttt 16776795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 571
Target Start/End: Original strand, 15095242 - 15095289
Alignment:
Q  525 ttgtctctttttacaagatcc-tttgatattttcaagtacattaatta 571  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  15095242 ttgtccctttttataagatccctttgatattttcaagtacattaatta 15095289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 605
Target Start/End: Complemental strand, 20113408 - 20113325
Alignment:
Q  524 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaa-ttatttatcaatattctcctatttattttatat 605  Q
    |||||||||||||| |||||| |||||||||||  |||||||||| |||| || |||| |||||  | ||||||||||||||||    
T  20113408 tttgtctctttttataagatctctttgatatttcaaagtacattacttaatttttttaccaatacacccctatttattttatat 20113325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 601
Target Start/End: Complemental strand, 12918832 - 12918754
Alignment:
Q  524 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttatttt 601  Q
    |||||| ||||||| |||||||||| | ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  12918832 tttgtccctttttataagatccttttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 12918754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 609
Target Start/End: Original strand, 35938408 - 35938490
Alignment:
Q  524 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||||||||||||| ||||| |||| ||||||||||| |||||||    |||||||| ||| |  | ||||||||||||||||||||    
T  35938408 tttgtctctttttataagattcttttgatattttcaaatacatta----attatttaccaacacacccctatttattttatatcttt 35938490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 571
Target Start/End: Complemental strand, 27646300 - 27646252
Alignment:
Q  524 tttgtctctttttacaagatccttt-gatattttcaagtacattaatta 571  Q
    |||||||||||||| |||| ||||| | |||||||||||||||||||||    
T  27646300 tttgtctctttttataagacccttttggtattttcaagtacattaatta 27646252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 524 - 609
Target Start/End: Original strand, 26699360 - 26699445
Alignment:
Q  524 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||||||||||||| || |  |||||||||||  ||||| ||||||||||||||||||||||| | |||||||||||| |||||||    
T  26699360 tttgtctctttttataaaactctttgatatttcgaagtatattaattaattatttatcaatatacccctatttattttctatcttt 26699445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 524 - 609
Target Start/End: Original strand, 26969093 - 26969178
Alignment:
Q  524 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||||||||||||| || |  |||||||||||  ||||| ||||||||||||||||||||||| | |||||||||||| |||||||    
T  26969093 tttgtctctttttataaaactctttgatatttcgaagtatattaattaattatttatcaatatacccctatttattttctatcttt 26969178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 605
Target Start/End: Original strand, 30117156 - 30117238
Alignment:
Q  524 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 605  Q
    |||||||||||||| |||| |||||||||||||  ||||||||||||||||| |||| ||| |  |  |||||||||||||||    
T  30117156 tttgtctctttttataagactcctttgatatttgtaagtacattaattaattctttaccaacaaacctctatttattttatat 30117238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 525 - 606
Target Start/End: Original strand, 37700137 - 37700219
Alignment:
Q  525 ttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatc 606  Q
    |||| |||||||| |||| ||||||||||||| | |||||||||||||||| |||| ||| ||   |||||||||||||||||    
T  37700137 ttgtttctttttataagactcctttgatatttccgagtacattaattaattctttaccaacatatccctatttattttatatc 37700219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 571
Target Start/End: Original strand, 39971057 - 39971105
Alignment:
Q  524 tttgtctctttttacaagatcc-tttgatattttcaagtacattaatta 571  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  39971057 tttgtccctttttataagatccctttgatattttcaagtacattaatta 39971105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 579
Target Start/End: Complemental strand, 33819309 - 33819253
Alignment:
Q  524 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattattta 579  Q
    |||||||||||||| ||||| | |||||||||| ||| |||||||||||||| ||||    
T  33819309 tttgtctctttttataagattcatttgatatttccaaatacattaattaatttttta 33819253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 524 - 609
Target Start/End: Original strand, 5966616 - 5966702
Alignment:
Q  524 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||||||||||||| ||||| | |||||||||||||||||| |||||||| |  |||||||||| | | ||||||||||||||||||    
T  5966616 tttgtctctttttataagattcatttgatattttcaagtacgttaattaactcattatcaatatacccttatttattttatatcttt 5966702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 524 - 602
Target Start/End: Original strand, 50074453 - 50074532
Alignment:
Q  524 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttta 602  Q
    |||||||||||||| |||| | ||||| ||||| |||||||||||||||||| |||| ||| || |||||||||||||||    
T  50074453 tttgtctctttttataagacttctttggtatttccaagtacattaattaattctttaccaacatactcctatttatttta 50074532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 609
Target Start/End: Original strand, 26768428 - 26768514
Alignment:
Q  524 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||||||||||||| ||||||| |||  |||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  26768428 tttgtctctttttataagatcccttttgtatttctaagtacattaattaattctttaccaacatacccctatttattttatatcttt 26768514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 15624868 - 15624804
Alignment:
Q  545 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    ||||| |||||||||||||||||||||||| |||| ||| || |  |||||||||||||||||||    
T  15624868 ctttggtattttcaagtacattaattaattctttaccaacatacctctatttattttatatcttt 15624804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 601
Target Start/End: Original strand, 4389652 - 4389730
Alignment:
Q  524 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 601  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||||| || |||| |||  | ||| ||||||||||    
T  4389652 tttgtctctttttataagatctctttgatatttccaagtacattaattatttctttaccaacctactcttatttatttt 4389730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 527 - 579
Target Start/End: Original strand, 35693108 - 35693161
Alignment:
Q  527 gtctctttttacaagatcc-tttgatattttcaagtacattaattaattattta 579  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  35693108 gtctctttttataagatccctttgatattttcaagcacattaattaatttttta 35693161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 579
Target Start/End: Complemental strand, 4371736 - 4371702
Alignment:
Q  545 ctttgatattttcaagtacattaattaattattta 579  Q
    ||||||||||||||||||||||||||| |||||||    
T  4371736 ctttgatattttcaagtacattaattatttattta 4371702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 609
Target Start/End: Original strand, 46083910 - 46083995
Alignment:
Q  524 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||||||||||||| |||  || ||||||||||||||  ||||||||||| | |||| |||||| | || |||||||||||||||||    
T  46083910 tttgtctctttttataagcctcatttgatattttcaaacacattaattaactttttaccaatatac-cccatttattttatatcttt 46083995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 609
Target Start/End: Complemental strand, 335 - 270
Alignment:
Q  544 cctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||| |||||||||| |||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  335 ccttagatattttcatgtacattaattaattatttaccaacatactcatatttattttatatcttt 270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 609
Target Start/End: Complemental strand, 4897736 - 4897651
Alignment:
Q  525 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    ||||||||||||| |||| | |||||||||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  4897736 ttgtctctttttataagacctctttgatatttcgaagtacattaattaattctttaccaacatacccctatttattttatatcttt 4897651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 609
Target Start/End: Complemental strand, 4945130 - 4945045
Alignment:
Q  525 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    ||||||||||||| |||| | |||||||||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  4945130 ttgtctctttttataagacctctttgatatttcgaagtacattaattaattctttaccaacatacccctatttattttatatcttt 4945045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 609
Target Start/End: Complemental strand, 12296422 - 12296337
Alignment:
Q  525 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    ||||||||||||| ||||   ||||||||||| |||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  12296422 ttgtctctttttataagacatctttgatatttccaagtacattaattaattctttaccaacatacccctatttattttatatcttt 12296337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 605
Target Start/End: Original strand, 12969554 - 12969636
Alignment:
Q  524 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 605  Q
    |||||||||||||| |||| || |||| ||||||||| || ||||||||||| |||| ||| || | ||||||||||||||||    
T  12969554 tttgtctctttttataagacccctttgttattttcaaatatattaattaattctttaccaacatacccctatttattttatat 12969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 27725665 - 27725601
Alignment:
Q  545 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||||||||||| |||||||||||||| || ||||||||| | | | ||||||||||| ||||||    
T  27725665 ctttgatatttttaagtacattaattatttctttatcaatctacccttatttattttacatcttt 27725601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 601
Target Start/End: Complemental strand, 21522984 - 21522929
Alignment:
Q  546 tttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 601  Q
    |||||||||||||| ||||||||||| ||||||||||| || | | ||||||||||    
T  21522984 tttgatattttcaattacattaattatttatttatcaacatacccttatttatttt 21522929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 579
Target Start/End: Complemental strand, 26273529 - 26273494
Alignment:
Q  544 cctttgatattttcaagtacattaattaattattta 579  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26273529 cctttgatattttcaagtacattaattaattcttta 26273494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 14493779 - 14493726
Alignment:
Q  551 tattttcaagtacattaattaattatttatcaatattctcctatttattttata 604  Q
    ||||||||| |||||||||||||| |||| ||| || | |||||||||||||||    
T  14493779 tattttcaaatacattaattaattctttaccaacatacccctatttattttata 14493726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 546 - 609
Target Start/End: Original strand, 28017009 - 28017072
Alignment:
Q  546 tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||| |||||||||||||||||||||||| || |||||||  | ||||||||||||||||||||    
T  28017009 tttggtattttcaagtacattaattaattcttgatcaatacacccctatttattttatatcttt 28017072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 609
Target Start/End: Original strand, 18312232 - 18312318
Alignment:
Q  524 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    ||||| |||||||| ||||| |||| ||||||||||| |||||||||||||| |||| ||| ||  | |||||||||||||||||||    
T  18312232 tttgtttctttttataagatacttttgatattttcaaatacattaattaattttttaccaacatatttctatttattttatatcttt 18312318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 525 - 574
Target Start/End: Complemental strand, 20307530 - 20307481
Alignment:
Q  525 ttgtctctttttacaagatcctttgatattttcaagtacattaattaatt 574  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  20307530 ttgtctctttttataagatcctgtgatattttcaaatacattaattaatt 20307481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 601
Target Start/End: Original strand, 30534748 - 30534826
Alignment:
Q  524 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 601  Q
    |||||| ||||||| |||| ||||||||||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  30534748 tttgtccctttttataagactcctttgatattttcaagtacattaattatttctttaccaacatacccttatttatttt 30534826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 601
Target Start/End: Complemental strand, 32964389 - 32964311
Alignment:
Q  524 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 601  Q
    |||||| ||||||| |||| ||||||| ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  32964389 tttgtccctttttataagagtcctttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 32964311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 578
Target Start/End: Complemental strand, 47534897 - 47534843
Alignment:
Q  524 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattattt 578  Q
    |||||| ||||||| || | |||||| ||||||||| ||||||||||||||||||    
T  47534897 tttgtccctttttataaaaccctttgctattttcaactacattaattaattattt 47534843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 605
Target Start/End: Complemental strand, 2087282 - 2087201
Alignment:
Q  525 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 605  Q
    ||||||||||||||||||   ||||  |||||||||||||||||||||||| |||| ||| |  | | ||||||||||||||    
T  2087282 ttgtctctttttacaagacatctttagtattttcaagtacattaattaattttttaccaacacacccttatttattttatat 2087201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 605
Target Start/End: Complemental strand, 30734770 - 30734688
Alignment:
Q  524 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 605  Q
    |||||| ||||||| |||| || ||||||||||||||||||| ||||||| | ||||||||||  | ||||||||||||||||    
T  30734770 tttgtcactttttataagactcatttgatattttcaagtacagtaattaactctttatcaatacacccctatttattttatat 30734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 609
Target Start/End: Complemental strand, 24260942 - 24260862
Alignment:
Q  530 tctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||||||| ||||||| |||||||||| ||||| |||||||||||| |||| ||| || | | ||||||||||||||||||    
T  24260942 tctttttataagatccctttgatatttccaagtgcattaattaattttttaccaacatacccttatttattttatatcttt 24260862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 609
Target Start/End: Original strand, 30512831 - 30512897
Alignment:
Q  544 cctttgatattttcaagtacattaattaa-ttatttatcaatattctcctatttattttatatcttt 609  Q
    |||||| |||||||||||||||||||||| || |||| ||| || | ||||||||||||||||||||    
T  30512831 cctttggtattttcaagtacattaattaatttttttaccaacatacccctatttattttatatcttt 30512897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 579
Target Start/End: Complemental strand, 19701202 - 19701167
Alignment:
Q  544 cctttgatattttcaagtacattaattaattattta 579  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19701202 cctttgatattttcaagtacattaattaattcttta 19701167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 545 - 600
Target Start/End: Original strand, 55993 - 56048
Alignment:
Q  545 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattt 600  Q
    ||||| |||||||||||||||| ||||||| |||||||| || |||||||||||||    
T  55993 ctttggtattttcaagtacatttattaattctttatcaacatactcctatttattt 56048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 609
Target Start/End: Complemental strand, 8646176 - 8646113
Alignment:
Q  546 tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 609  Q
    |||| ||||| |||||||||||||||||| |||| ||  || | ||||||||||||||||||||    
T  8646176 tttgctatttccaagtacattaattaattttttaccaccatacccctatttattttatatcttt 8646113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 601
Target Start/End: Complemental strand, 6418646 - 6418568
Alignment:
Q  524 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 601  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  6418646 tttgtccctttttataagacctctttgatattttcaagtacattaattatttctttaccaacatacccttatttatttt 6418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 571
Target Start/End: Complemental strand, 2365087 - 2365039
Alignment:
Q  524 tttgtctctttttacaaga-tcctttgatattttcaagtacattaatta 571  Q
    |||||| ||||||| |||| |||||||||||||||||||||| ||||||    
T  2365087 tttgtcactttttataagactcctttgatattttcaagtacactaatta 2365039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 2665696 - 2665640
Alignment:
Q  545 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 601  Q
    ||||| |||||||||||| ||| ||||||| |||||||| || ||||||||| ||||    
T  2665696 ctttggtattttcaagtatatttattaattctttatcaacatactcctatttttttt 2665640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 601
Target Start/End: Original strand, 47226 - 47276
Alignment:
Q  551 tattttcaagtacattaattaattatttatcaatattctcctatttatttt 601  Q
    |||||||||||||||| ||||||| |||| ||| || ||||||||||||||    
T  47226 tattttcaagtacatttattaattctttaccaacatactcctatttatttt 47276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 579
Target Start/End: Complemental strand, 11653 - 11597
Alignment:
Q  524 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattattta 579  Q
    |||||||||||||| |||| || |||| |||||| |||||||||||||| |||||||    
T  11653 tttgtctctttttataagacccctttggtatttttaagtacattaattatttattta 11597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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