View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21280_low_9 (Length: 558)
Name: NF21280_low_9
Description: NF21280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21280_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Original strand, 7848548 - 7849082
Alignment:
| Q |
17 |
tcttttagatttcttggcccaatcaaatatctcgtgaattttggtaacagcctgtgggcccagaggtgcaacatctcctccggtcatcattgcataatcc |
116 |
Q |
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| T |
7848548 |
tcttttagatttcttggcccaatcaaatatctcgtgaattttggtaacagcctgtgggcccagaggtgcaacatctcctccggtcatcattgcataatcc |
7848647 |
T |
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| Q |
117 |
aaacccttgcagaaaaattgaaatagtcaaaggtagttaaagacaaacttcaccacaatttctgcaaataaagtactgatagtgaaacgtgaatataatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7848648 |
aaacccttgcagaaaaattgaaatagtcaaaggtagttaaagacaaactttaccacaatttctgcaaataaagtactgatagtgaaacgtga-tataatt |
7848746 |
T |
|
| Q |
217 |
gatttagtgcctcactttaaagggaatagtgggatgatatagtcaatgaatagaaaatcaacggttaagatttaattaacttcttagtttataatttatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7848747 |
gatttagtgcctcactttaaagggaatagtgggatgatatagtcaatgaatagaaaatcaacggttaagatttaattaacttcttagtttataatttatc |
7848846 |
T |
|
| Q |
317 |
tacatgcatatgattaattttactatcaatggctataattacttgctttttcctccaaaatgactttttcactttagagtagccaagttctaaaataata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7848847 |
tacatgcatatgattaattttactatcaatggctataattacttgctttttcctccaaaatgactttttcactttagagtagccaagttctaaaataata |
7848946 |
T |
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| Q |
417 |
tatctaaaggaagtccatggcttaatagcagaaacagataacaagataagtcaaatccatttgtaggcagcagcgtcaatataaaacaaaatttgatcat |
516 |
Q |
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| T |
7848947 |
tatctaaaggaagtccatggcttaatagcagaaacagataacaagataaatcaaatccatttgtaggcagcagcgtcaatataaaacaaaatttgatcat |
7849046 |
T |
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| Q |
517 |
catagtaattaagtttaatccatttattcatctcac |
552 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
7849047 |
catagtaattaagtttaatccatttattcatatcac |
7849082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 426 - 552
Target Start/End: Original strand, 21625453 - 21625584
Alignment:
| Q |
426 |
gaagtccatggcttaat-agcagaaacagataacaagataagtcaaatccatttgtaggcagcagc----gtcaatataaaacaaaatttgatcatcata |
520 |
Q |
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|||||| ||| |||||| |||||| ||| ||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||| ||||| |
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| T |
21625453 |
gaagtctatgacttaattagcagagacacataacaagataagacaaatctatttgtaggcatcagccagcgtcaatataaaacaaaatttgatcttcata |
21625552 |
T |
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| Q |
521 |
gtaattaagtttaatccatttattcatctcac |
552 |
Q |
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|||| |||| |||||| |||||||||| |||| |
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| T |
21625553 |
gtaactaagcttaatcgatttattcatatcac |
21625584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 1010519 - 1010423
Alignment:
| Q |
27 |
ttcttggcccaatcaaatatctcgtgaattttggtaacagcctgtgggcccagaggtgcaacatctcctccggtcatcattgcataatccaaaccct |
123 |
Q |
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||||||||||||||||| | |||||| || || || |||||||||| ||||| || ||||||||||| || ||||||| |||||||||||| |||| |
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| T |
1010519 |
ttcttggcccaatcaaacaactcgtgtatctttgttacagcctgtgatcccagtggagcaacatctcccccagtcatcaatgcataatccaatccct |
1010423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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