View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21281_high_2 (Length: 530)
Name: NF21281_high_2
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 9 - 514
Target Start/End: Complemental strand, 38999579 - 38999074
Alignment:
| Q |
9 |
gatgaacagacatacaaggcaaaaacattgattagaatggattcattcaatcagagtcatcaaaacaacaactttaggtacaatccaaatttgaatagag |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38999579 |
gatgaacagacattcaaggcaaaaacattgattagaatggattcattcaatcagagtcatcaaaacaacaactttaggtacaatccaaatttgaatagag |
38999480 |
T |
|
| Q |
109 |
ctacccaattagatgatgaagatgaagcagagttcacaggtcttcttgatgtctatgttcatcatgctagaaacattcataacatttgcatctatgataa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38999479 |
ctacccaattagatgatgaagatgaagcagagttcacaggtcttcttgatgtctatgttcatcatgctagaaacattcataacatttgcatctatgataa |
38999380 |
T |
|
| Q |
209 |
tcaagatgtatatgctaaattctcccttacttacaaccctgatgaaactctttctacaagaataatcaatggaggtggaaaaaatccaacattcaatgaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38999379 |
tcaagatgtatatgctaaattctcccttacttacaaccctgatgaaactctttctacaagaataatcaatggaggtggaaaaaatccaacattcaatgaa |
38999280 |
T |
|
| Q |
309 |
aacttgaggatgaagataactcaaatagatgctgttatgaaatgtgaaatttggatgtttagtagagcaagaattcacatggaggaccaacttttagggt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38999279 |
aacttgaggatgaagataactcaaatagatgctgttatgaaatgtgaaatttggatgtttagtagagcaagaattcacatggaggatcaacttttagggt |
38999180 |
T |
|
| Q |
409 |
ttgctttggttccaatttcacaaattgttggaaaaggaaaagtaactcaagactatagcctttcttcaactgatctttttcattctccagctggaactgt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38999179 |
ttgctttggttccaatttcacaaattgttggaaaaggaaaagtaactcaagactatagcctttcttcaactgatctttttcattctccagctggaactgt |
38999080 |
T |
|
| Q |
509 |
tcaatt |
514 |
Q |
| |
|
|||||| |
|
|
| T |
38999079 |
tcaatt |
38999074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University